Key message Fine-mapping separated Qfhs.ifa-5A into a major QTL mapping across the centromere and a minor effect QTL positioned at the distal half of 5AS. Both increase Fusarium resistance and anther extrusion. Abstract The Fusarium head blight (FHB) resistance QTL Qfhs.ifa - 5A resides in the low-recombinogenic pericentromeric region of chromosome 5A making fine-mapping particularly arduous. Qfhs.ifa - 5A primarily contributes resistance to fungal entry with the favorable allele descending from the highly Fusarium resistant cultivar Sumai-3. Fine-mapping a near-isogenic recombinant inbred line population partitioned the Qfhs.ifa - 5A interval into 12 bins. Near-isogenic lines recombining at the interval were phenotyped for FHB severity, anther retention and plant height. Composite interval mapping separated the initially single QTL into two QTL. The major effect QTL Qfhs.ifa - 5Ac mapped across the centromere and the smaller effect QTL Qfhs.ifa - 5AS mapped to the distal half of 5AS. Although Qfhs.ifa - 5Ac and Qfhs.ifa - 5AS intervals were as small as 0.1 and 0.2 cM, their corresponding physical distances were large, comprising 44.1 Mbp and 49.2 Mbp, respectively. Sumai-3 alleles at either QTL improved FHB resistance and increased anther extrusion suggesting a pleiotropic effect of anthers on resistance. This hypothesis was supported by greenhouse experiments using the susceptible cultivar Remus and its resistant near-isogenic line NIL3 carrying the entire Qfhs.ifa - 5A segment. By manually removing anthers prior to spray inoculation both, Remus and NIL3 became almost equally resistant in the early phase of the disease development and were significantly less diseased than variants without anther manipulation. At late time points the positive effect of the anther removal became smaller for Remus and disappeared completely for NIL3. Results affirm that absence of anthers enhanced resistance to initial infection but did not protect plants from fungal spreading within spikes. Electronic supplementary material The online version of this article (10.1007/s00122-019-03336-x) contains supplementary material, which is available to authorized users.
We performed an inoculation experiment using the blue-stain fungus Endoconidiophora polonica at the Rosalia Roof study site, which was set up to study drought effects on Norway spruce susceptibility to attacks by the European spruce bark beetle Ips typographus. Tree resistance parameters such as resin flow rate and extent of hypersensitive wound reaction in the phloem were investigated prior to and after fungal infection. Sample trees with different drought treatments (trees fully covered or semi-covered by roofs, control trees) were inoculated with E. polonica in July 2014. In order to check for areas of phloem necrosis, the outer bark around the inoculation holes was scratched off 6 weeks later. We recorded the amount of resin exudation within 12 hours overnight in August and September 2013 and 2014. Although wound reaction zones did not differ in size between tree collectives of the various treatments, fully covered trees tended to exhibit larger necrotic areas compared to control trees. The least water supplied trees showed lowest resin flow rates prior to fungal inoculation, but were the only group to show significantly enhanced resin flow five weeks after the evaluation of defence reactions. Our results agree with earlier findings that wounding and few fungal inoculations can increase tree resistance in the medium term given not too severe water stress. Further investigations will clarify how water stress affects the availability of non-structural carbohydrates for secondary metabolism, when depletion of resources eventually occurs, and at which point trees are most susceptible to bark beetle attack.
Key message Association mapping and phenotypic analysis of a diversity panel of 238 bread wheat accessions highlights differences in resistance against common vs. dwarf bunt and identifies genotypes valuable for bi-parental crosses. Abstract Common bunt caused by Tilletia caries and T. laevis was successfully controlled by seed dressings with systemic fungicides for decades, but has become a renewed threat to wheat yield and quality in organic agriculture where such treatments are forbidden. As the most efficient way to address this problem is the use of resistant cultivars, this study aims to broaden the spectrum of resistance sources available for breeders by identifying resistance loci against common bunt in bread wheat accessions of the USDA National Small Grains Collection. We conducted three years of artificially inoculated field trials to assess common bunt infection levels in a diversity panel comprising 238 wheat accessions for which data on resistance against the closely related pathogen Tilletia controversa causing dwarf bunt was already available. Resistance levels against common bunt were higher compared to dwarf bunt with 99 accessions showing $$\le$$ ≤ 1% incidence. Genome-wide association mapping identified six markers significantly associated with common bunt incidence in regions already known to confer resistance on chromosomes 1A and 1B and novel loci on 2B and 7A. Our results show that resistance against common and dwarf bunt is not necessarily controlled by the same loci but we identified twenty accessions with high resistance against both diseases. These represent valuable new resources for research and breeding programs since several bunt races have already been reported to overcome known resistance genes.
Creating new genetic variation by crossing two or more parents is the initial and often most important step when developing new crop varieties. Hence, several mate selection indices have been suggested to support the planning of crosses in genomic breeding pipelines that have been established in many breeding programmes in recent years. The corresponding index weights are however difficult to determine objectively, and these indices often feature weights determined by laborious grid searches or rules of thumb. The aim of this study was to compare methods that employ the latter approach with mate selection indices based on desired gains in simulations and an empirical Fusarium head blight experiment for winter wheat. The results indicated that the suggested desired gain indices outperform routinely used methods in terms of reaching a favourable balance between the short-term selection gain, long-term selection gain, as well as the genetic diversity. They might have beyond that a high prospect for making a broader spectrum of genetic diversity accessible in the framework of germplasm exchange between breeding programmes.
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