Sheep susceptibility to scrapie is governed by polymorphisms at two major sites, codons 136 and 171, of the prp gene. To get more insight into the prion protein (PrP) sequence-linked basis of differential scrapie susceptibility, a high yield one-step method for the purification (over 99% final purity) of the full-length recombinant sheep PrP was developed, based on the affinity of the conserved octapeptide repeats for transition-metal cations. Thermal and chemical denaturation experiments and limited proteolysis studies were performed on the natural variants (A136R171, V136Q171 and A136Q171) and a recombinant PrP mutated at position 136 (V136R171). Results revealed the influence of mutations in positions 136 and 171 on the folding thermodynamic parameters and on the conformation of the C-terminal domain. Together, our results show that the VQ cellular protein linked to higher scrapie susceptibility is intrinsically more compact and/or stable than the resistance-linked AR counterpart. This might lead to a lower in vivo clearance rate of VQ and a consequently higher probability of occurrence of pathological events.Keywords: sheep prion protein; sheep PrP variants; scrapie; PrP stability.Prion diseases are fatal neurodegenerative disorders affecting several mammalian species which can be of sporadic, inherited or transmissible origin [1]. Wide body of data, obtained from experimentally infected model species, supports the hypothesis that a conformational change in the host cellular prion protein is the key molecular event associated with this illness [2]. The pathological`scrapie' PrP conformation (PrP sc ) is characterized by increased b-sheet content, higher tendency to self-association, insolubility and protease resistance [3].In recent years, the availability of recombinant full-length mouse (mPrP) [4], Syrian hamster PrP [5], bovine [6] and human (human PrP) [7] PrPs, as well as their C-terminal domains, namely mouse PrP(121±231) [8], human PrP(90±231) [9,10] and Syrian hamster PrP(90±231) [11], rendered prion protein amenable to NMR structural analysis. In two species studied so far, mouse and Syrian hamster [5,12], PrPs show similar features, namely a rather unstructured N-terminal domain (23±120/23±124) linked to a structured core domain encompassing residues 121±231 (125±228 in SHaPrP). The latter consists in both cases in three a helices and two short antiparallel b strands [13,14].In mammals, several natural polymorphisms within the open reading frame of the prp gene influence the susceptibility of the host to prion diseases [15]. The corresponding amino-acid substitutions could affect the intrinsic stability of the protein, its folding pathways or ligand binding properties, or yet its clearance kinetics. All these factors could have significant influence on the progress of pathological processes. In sheep, a well defined polymorphism governs susceptibility to scrapie. Animals homozygous for the allele encoding the V136R154Q171 (VQ) variant exhibit high susceptibility to scrapie while those homozygous fo...