The spontaneous imbibition of liquid in nanopores of different roughness is investigated using coarse grain Molecular Dynamics (MD) simulation. The numerical model is presented and the simplifying assumptions are discussed in detail. The molecular-kinetic theory introduced by Blake is used to describe the effect of dynamic contact angle on fluid imbibition. The capillary roughness is modeled using a random distribution of coarse grained particles forming the wall. The Lucas-Washburn equation is used as a reference for analyzing the imbibition curves obtained by simulation. Due to the statistical nature of MD processing, a comprehensive approach was made to average and smooth the data to accurately define a contact angle. The results are discussed in terms of effective hydrodynamic and static capillary radii and their difference as a function of roughness and wettability.

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Using a coarse-grained model we perform a Monte Carlo simulation of the state behavior of an individual semiflexible macromolecule. Chains consisting of N = 256 and 512 monomer units have been investigated. A recently proposed enhanced sampling Monte Carlo technique for the bond fluctuation model in an expanded ensemble in four-dimensional coordinate space was applied. The algorithm allows one to accelerate the sampling of statistically independent three-dimensional conformations in a dense globular state. We found that the temperature of the intraglobular liquid-solid transition decreases with increasing chain stiffness. We have investigated the possible intraglobular orientationally ordered (i.e., liquid-crystalline) structures and obtained a diagram of states for chains consisting of N = 256 monomer units. This diagram contains regions of stability of coil, two spherical globules (liquid and solid), and rod-like globule conformations. Transitions between the globular states are rounded first-order ones since the states of liquid, solid, and cylinder-like globules do have different internal symmetry.