Sequencing of the complete mitochondrial DNA control region from 31 samples of the Eurasian otter, Lutra lutra , enabled us to establish the length and structure of this fragment, as well as to describe, for the first time, the RS3 repetitive region located at the 3 ′ end. In addition, genetic variability of the 5 ′ end was examined in 63 individuals, 57 of which were wild otters from the Iberian Peninsula and six captive reared otters. This analysis resulted in extremely low variability. All the samples from the Iberian Peninsula share a single haplotype, Lut 1, the most common haplotype in Europe. Captive otters showed two haplotypes: Lut 3, which has been described in wild otters from eastern Germany, and Lut 6, an haplotype not described to date. Higher variability was observed in the repetitive RS3 region. The tandem repeat was composed of an array of ten repeat units of 22 bp with differences in the repetitive motifs that differed in the arrays of different specimens. In total, 20 different haplotypes from 31 individuals were found. However, the geographical distribution of these haplotypes did not generate a phylogeographical signal.
Especially in urbanized landscapes, habitat fragmentation and increasing numbers of infrastructural features may limit genetic exchange among wildlife populations. Yet, whether this results in genetic differentiation among individuals in different habitat fragments will depend on both the species studied and the composition of the landscape. European pine martens (Martes martes) show clear spatial structure at a Europe-wide scale, but whether gene flow among habitat patches can be maintained at a more local scale in intensively urbanized areas remained unclear. Here, we analysed genotypic data from 270 pine martens sampled from locations scattered across the Netherlands, one of the most densely populated areas in the world. Using Bayesian clustering models we show that most likely maximum two large subpopulations exist in the Netherlands. We observed relatively low levels of genetic differentiation and genetic evidence of regular long-distance dispersal by juveniles that must have crossed one or multiple major highways. Our results suggest that genetic exchange among Dutch pine martens has, until 2010, not been impacted severely by the countries' dense infrastructural network. Furthermore this species seems to have maintained its genetic diversity despite a recent demographic bottleneck. These conclusions support the idea that the effects of habitat fragmentation may strongly differ between (groups of) species, and that prioritization and optimization of management decisions thus requires direct study of the targeted species.
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