The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.
Arbuscular mycorrhizal fungi (AMF) are a main component of soil microbiota in most agrosystems. As obligately mutualistic symbionts, they colonize the roots of the majority of plants, including crop plants. We used molecular techniques to investigate how different tillage systems (moldboard, shred-bedding, subsoil-bedding, and no tillage) can influence the AM fungal community colonizing maize, bean, and sorghum roots in an experimental site located in northern Tamaulipas, Mexico. Roots from 36 plants were analyzed using AM fungal-specific primers to partially amplify the small subunit (SSU) of the ribosomal DNA genes. More than 880 clones were screened for restriction fragment length polymorphism (RFLP) variation, and 173 of these were sequenced. Ten AM fungal types were identified and clustered into three AM fungal families: Gigasporaceae, Glomaceae, and Paraglomaceae. Glomus was the dominating taxon in all the samples. Four of the 10 identified types were distinct from any previously published sequences and could correspond to either known unsequenced species or unknown species. The fungal diversity was low in the four agriculture management systems, but the multidimensional scaling (MDS) analysis and log-linear-saturated model indicated that the composition of the AMF community was significantly affected by the tillage system. In conclusion, since some fungal types were treatment specific, agricultural practices could directly or indirectly influence AM biodiversity.
In this study, we have analyzed and compared the diversities of the arbuscular mycorrhizal fungi (AMF) colonizing the roots of five annual herbaceous species (Hieracium vulgare, Stipa capensis, Anagallis arvensis, Carduus tenuiflorus, and Avena barbata) and a perennial herbaceous species (Brachypodium retusum). Our goal was to determine the differences in the communities of the AMF among these six plant species belonging to different families, using B. retusum as a reference. The AMF small-subunit rRNA genes (SSU) were subjected to nested PCR, cloning, sequencing, and phylogenetic analysis. Thirty-six AMF phylotypes, belonging to Glomus group A, Glomus group B, Diversispora, Paraglomus, and Ambispora, were identified. Five sequence groups identified in this study clustered to known glomalean species or isolates: group Glomus G27 to Glomus intraradices, group Glomus G19 to Glomus iranicum, group Glomus G10 to Glomus mosseae, group Glomus G1 to Glomus lamellosum/etunicatum/luteum, and group Ambispora 1 to Ambispora fennica. The six plant species studied hosted different AMF communities. A certain trend of AMF specificity was observed when grouping plant species by taxonomic families, highlighting the importance of protecting and even promoting the native annual vegetation in order to maintain the biodiversity and productivity of these extreme ecosystems.A rbuscular mycorrhizal fungi (AMF) form associations with the majority of terrestrial plant species. Among their beneficial effects, they improve the growth and nutrition of individual plants (41, 52), thus promoting plant performance and enhancing the sustainability of ecosystems (54).Plant diversity and productivity in ecosystems are influenced significantly by the AM fungal diversity in the soil (50). In the Mediterranean semiarid areas of southeast Spain, the acceleration of soil degradation due to the climatic characteristics of this area has become an important problem. Both the rainy season, with scarce and irregular rainfall, and the dry summer contribute to this process. Under these conditions, besides a loss of vegetation cover and degeneration of the physical, chemical, and biological soil properties, a reduction in the amount, diversity, and activity of AMF is produced (9, 34). It has been shown that an increase in the number of shrub species used to restore degraded lands increases the AMF diversity in the soil and, thus, the below-ground, positive interactions (5). Previous studies have revealed that AMF stimulate the growth of shrubs and improve their drought tolerance (15, 33), while at the same time, the shrubs exert a selective pressure on the AMF species (2). Thus, it is important to obtain a better understanding of the composition of the AMF community in these ecosystems.Recent reports have shown that AMF-plant associations may not always be species specific (31, 37) and that factors such as soil properties can determine the AMF-plant interactions (24,26,38).The application of molecular techniques in recent years to identity AMF in the field, p...
The application of Trichoderma strains with biocontrol and plant growth-promoting capacities to plant substrates can help reduce the input of chemical pesticides and fertilizers in agriculture. Some Trichoderma isolates can directly affect plant pathogens, but they also are known to influence the phytohormonal network of their host plant, thus leading to an improvement of plant growth and stress tolerance. In this study, we tested whether alterations in the phytohormone signature induced by different Trichoderma isolates correspond with their ability for biocontrol and growth promotion. Four Trichoderma isolates were collected from agricultural soils and were identified as the species Trichoderma harzianum (two isolates), Trichoderma ghanense, and Trichoderma hamatum. Their antagonistic activity against the plant pathogen Fusarium oxysporum f. sp. melonis was tested in vitro, and their plant growth-promoting and biocontrol activity against Fusarium wilt on melon plants was examined in vivo, and compared to that of the commercial strain T. harzianum T-22. Several growth- and defense-related phytohormones were analyzed in the shoots of plants that were root-colonized by the different Trichoderma isolates. An increase in auxin and a decrease in cytokinins and abscisic acid content were induced by the isolates that promoted the plant growth. Principal component analysis (PCA) was used to evaluate the relationship between the plant phenotypic and hormonal variables. PCA pointed to a strong association of auxin induction with plant growth stimulation by Trichoderma. Furthermore, the disease-protectant ability of the Trichoderma strains against F. oxysporum infection seems to be more related to their induced alterations in the content of the hormones abscisic acid, ethylene, and the cytokinin trans-zeatin riboside than to the in vitro antagonism activity against F. oxysporum.
Mycorrhizae may help plants to thrive in Mediterranean semiarid ecosystems by altering antioxidant enzyme activities. Our objective was to determine the influence of mycorrhizal inoculation with an allochthonous arbuscular mycorrhizal (AM) fungus, Glomus claroideum, Schenck & Smith, or with a mixture of native AM fungi, on the activity of antioxidant enzymes from shoots of Olea europaea L. ssp. sylvestris, Retama sphaerocarpa (L.) Boissier and Rhamnus lycioides L. seedlings afforested in a degraded Mediterranean semiarid soil. One year after planting, shoot biomass of inoculated O. europaea seedlings was about 630%, of non-inoculated plants. Shoot biomass of G. claroideum-colonized R. sphaerocarpa was greater than that of seedlings inoculated with the mixed native AM fungi after 12 months. Inoculation with a mix of native AM fungi was the most effective treatment for increasing shoot biomass and N, P and K contents in shoot tissues of R. lycioides. Both mycorrhizal inoculation treatments increased the nutrient contents in shoots of O. europaea and R. lycioides. In O. europaea plants, the inoculation treatments increased catalase, ascorbate peroxidase and dehydroascorbate reductase activities, but not monodehydroascorbate reductase and glutathione reductase activities. Inoculation with G. claroideum increased the activities of all antioxidant enzymes in R. sphaerocarpa. Monodehydroascorbate reductase, glutathione reductase and superoxide dismutase activities in R. lycioides leaves were preferentially increased by inoculation with the mixture of native AM fungi. This work support the view that increased antioxidant enzyme activities could be involved, at least in part, in the beneficial effects of mycorrhizal colonization on the performance of shrub species grown under semi-arid Mediterranean conditions.
The aims of the present study are to find out whether the effects of arbuscular mycorrhizal (AM) symbiosis on plant resistance to water deficit are mediated by the endogenous abscisic acid (ABA) content of the host plant and whether the exogenous ABA application modifies such effects. The ABA-deficient tomato mutant sitiens and its near-isogenic wild-type parental line were used. Plant development, physiology, and expression of plant genes expected to be modulated by AM symbiosis, drought, and ABA were studied. Results showed that only wild-type tomato plants responded positively to mycorrhizal inoculation, while AM symbiosis was not observed to have any effect on plant development in sitiens plants grown under well-watered conditions. The application of ABA to sitiens plants enhanced plant growth both under well-watered and drought stress conditions. In respect to sitiens plants subjected to drought stress, the addition of ABA had a cumulative effect in relation to that of inoculation with G. intraradices. Most of the genes analyzed in this study showed different regulation patterns in wild-type and sitiens plants, suggesting that their gene expression is modulated by the plant ABA phenotype. In the same way, the colonization of roots with the AM fungus G. intraradices differently regulated the expression of these genes in wild-type and in sitiens plants, which could explain the distinctive effect of the symbiosis on each plant ABA phenotype. This also suggests that the effects of the AM symbiosis on plant responses and resistance to water deficit are mediated by the plant ABA phenotype.
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