The response of the microbial community to Saharan dust deposition was investigated in 6 large mesocosms (52 m 3 ) deployed at an oligotrophic coastal site in the NW Mediterranean Sea in June 2008 (DUNE project). The mesocosms represented well the environmental conditions observed at the study site during the 8 d experimental period, and the triplicate mesocosms exhibited high reproducibility for each treatment. Dust deposition resulted in an increase in chlorophyll a concentration (0.22 ± 0.03 µg l -1 ), as compared to that in the control treatments (0.12 ± 0.01 µg l -1 ), but no treatment effect was observed for bacterial heterotrophic abundance at 5 m depth. Results from the fingerprinting technique CE-SSCP indicate a temporal evolution of the structure of the total (16S rRNA gene) and active (16S rRNA transcripts) bacterial community, and Saharan dust deposition had a noticeable structuring effect on the active bacterial community. Combining results from 16S rRNA gene clone libraries and CE-SSCP indicates that the relative contribution of Alteromonas macleodii to the active bacterial community was enhanced 2-fold following dust addition. The 2 operational taxonomic units (OTUs) Thiothrix and Alteromonas, belonging to Gammaproteobacteria, and the Bacteroidetes OTU NS5-1 were specific to the clone libraries from the dust-amended mesocosms or more abundant in these than in the control ones. CARD-FISH analyses, however, indicate that these OTUs had overall low abundances (1 to 5% of total DAPI-counts). Despite the pronounced temporal trend observed during the experimental period, dust deposition had a small, but noticeable structuring effect on the heterotrophic bacterial community that was detectable only at the OTU level at 99% similarity of the 16S rRNA gene. KEY WORDS: Saharan dust deposition · In situ mesocosms · CE-SSCP · CARD-FISH · Clone libraries · Alteromonas macleodii · NW Mediterranean SeaResale or republication not permitted without written consent of the publisher Aquat Microb Ecol 62: 201-213, 2011 dust addition markedly stimulated phytoplankton primary production and induced a shift from Cyanobacteria to diatoms, while the response in microbial community respiration was minor, resulting in an increase in the ratio of primary production to respiration (Duarte et al. 2006). In contrast, estuarine heterotrophic bacterial and phytoplankton primary production were both stimulated by organic nitrogen introduced by rainfall (Seitzinger & Sanders 1999). These studies demonstrate that atmospheric inputs can impact autotrophic and heterotrophic microbial communities with important consequences for ocean biogeochemistry.In the Mediterranean Sea, which is during the stratified period mostly a LNLC region, Saharan dust events represent a dominant source of atmospheric deposition. Previous studies have demonstrated that, during the summer stratification period, atmospheric dust is the main external source of phosphorus (Ridame & Guieu 2002) and of iron (Bonnet & Guieu 2006) in the surface mixed ...

The temporal changes in major bacterial groups and bulk heterotrophic activity were determined during the growth, senescence and post-bloom phases of a Phaeocystis globosa bloom, at a coastal site in the eastern English Channel. Cell-specific exoenzymatic activities were highest during the growth period of P. globosa, while bacterial abundance and bacterial heterotrophic production peaked during the senescence of the P. globosa bloom. Bacteroidetes and Gammaproteobacteria were the most important bacterial groups during the growth period of P. globosa, contributing between 13 and 47% of bulk bacterial abundance and leucine incorporation. At the end of the phytoplankton growth period, Gammaproteobacteria were the most important contributors to bacterial heterotrophic production, accounting for 68% of bulk leucine incorporation. During the senescent phase, 36 and 29% of bulk leucine incorporation were attributable to Bacteroidetes and Alphaproteobacteria, respectively. Finally, after the disappearance of the bloom, Gamma-and Alphaproteobacteria dominated by the Roseobacter clade were responsible for 33 and 43% of bulk leucine incorporation, respectively. The relative abundance of the bacterial groups showed little variability between consecutive dates during most of the study period. The contributions of different bacterial groups to bulk abundance and leucine incorporation were correlated with exo-proteolytic and -glucosidic activities and with particulate organic carbon, suggesting at least some specificity of these bacterial groups with respect to their metabolic properties in the environment.

We investigated the abundance and activity of SAR11 on a monthly time scale between January 2008 and October 2008 in the oligotrophic NW Mediterranean Sea. Applying MICRO-CARD-FISH, we observed that SAR11 had a large contribution to bulk abundance (37 ± 6% of DAPI-stained cells) and to bulk bacterial heterotrophic production (BHP), as estimated from leucine incorporation (55 ± 15% of DAPI-cells assimilating leucine) in surface waters (5 m) throughout the study period. SAR11 contributed also substantially to the assimilation of glucose, ATP, and a combination of amino acids (44 ± 17%, 37 ± 14%, and 43 ± 12% of DAPI cells assimilating these compounds, respectively), organic compounds that provide either single or combined sources of C, P, and N. Temporal changes in the abundance of SAR11 cells that assimilated leucine, glucose, amino acids, and ATP revealed a pattern consistent with that of substrate-active DAPI cells, suggesting that the activity of SAR11 can explain to a large extent the variability in total cells contributing to the utilization of these compounds. Short-term nutrient enrichment experiments performed on each sampling date revealed a strong co-limitation of at least two of the three elements analyzed (C, N, P), in particular, during summer and early autumn. The in situ abundance of SAR11 cells assimilating leucine appeared to increase with P limitation as determined in the nutrient enrichment experiments (r = 0.81, p = 0.015). Our results demonstrate that SAR11 is an important component of the active bacterial community in the NW Mediterranean Sea. Our observations further indicate that the activity of the bulk bacterial community is linked to the activity of SAR11, possibly due to its adaptation to nutrient limitation.

We investigated the impact of water masses originating from freshwater input on bacterial heterotrophic metabolism and community structure at an offshore site in the oligotrophic NW Mediterranean Sea in 2007 and 2008. By combining 16S rRNA gene clone libraries and MICRO-CARD-FISH we determined the dominant operational taxonomic units (OTU) and their contribution to bulk abundance and activity in the presence of buoyant water masses characterized by lower salinity (LSW, < 37.9) and compared these with the winter and spring phytoplankton blooms. We demonstrate that organic matter associated with LSW markedly stimulated bacterial heterotrophic production as determined by [(3) H]-leucine incorporation. The OTUs SAR11-IA, SAR11-IIB, SAR86-I and SAR86-III were dominant in all clone libraries, while the Roseobacter clade and the Bacteroidetes OTU NorSea72 were more specific to the spring phytoplankton bloom. The relative contribution of these OTUs to leucine incorporation varied between 23% and 69% for SAR11, 2% and 17% for Roseobacter and was up to 4% for NorSea72. Together, they accounted for roughly 50% of bulk abundance and leucine incorporation during the four situations investigated. Our results suggest that a few cosmopolitan OTUs respond to different DOM sources in the NW Mediterranean Sea.