The nucleotide sequence of a 1467 bp fragment of Streptomyces hygroscopicus DNA containing the gene (hyg) encoding a hygromycin B phosphotransferase (HPH) has been determined. The N-terminal amino acid sequence of HPH determined by automated Edman degradation has allowed the coding sequence of the hyg gene to be identified. The translation initiation triplet is GTG and 5 bp preceding it there is a sequence complementary to the 3'-end of 16S rRNA from S. lividans. The transcriptional start and termination sites have been determined; the presumptive promoter region has only partial homology to that of the Streptomyces vinaceus vph gene and is different to the promoter sequences of other Streptomyces genes.

Microbial mats have been implicated in exceptional fossil preservation. Few analyses have addressed how these complex-multilayered biofilms promote fossil preservation. The sequence of changes during decay of neon tetra fish were tracked up to 27 months, and their decomposition in mats was compared against nonmat sediments (control fish). Statistically significant differences in quantitative variables (length, width, and thickness) are provided (ANOVA test, in all cases, P , 0.001). Changes in the qualitative features (body-head, fins, scale connection, and eye and body coloration) were phenetically analyzed resulting in two clusters and highlighting that notable differences in decay began at day 15. Mat fish show a delayed decomposition maintaining the external and internal body integrity, in which soft organs were preserved after 27 months as shown by Magnetic Resonance Imaging. We discuss how the organization, structure, and activity of this community are interrelated, favoring exceptional preservation. Microbial mats entomb the fish from the earliest stages, forming a Ca-rich coat over the carcass while embedding it in an anoxic condition. This quick entombment provides important protection against abiotic and/or biotic agents.

No abstract

No abstract

The pattern and sequence of the decomposition of the Pipidae African dwarf frog (Hymenochirus boettgeri) is tracked in an experiment with microbial mats in order to explore soft tissue preservation over three years. Frog decay in microbial mats is preceded by rapid entombment (25–30 days) and mediated by the formation of a sarcophagus, which is built by a complex microbial community. The frog carcasses maintained a variety of soft tissues for years. Labile organic structures show greater durability within the mat, cells maintain their general shape (bone marrow cells and adipocytes), and muscles and connective tissues (adipose and fibrous tendons) exhibit their original organic structures. In addition, other soft tissues are promptly mineralized (day 540) in a Ca-rich carbonate phase (encephalic tectum) or enriched in sulphur residues (integumentary system). The result is coherent with a bias in soft-tissue preservation, as some tissues are more likely to be conserved than others. The outcomes support observations of exceptionally preserved fossil anurans (adults and tadpoles). Decomposition in mats shows singular conditions of pH and dissolved oxygen. Mineralization processes could be more diverse than in simple heterotrophic biofilms, opening new taphonomic processes that have yet to be explored.

Microbial mats have been hypothesized to improve the persistence and the preservation of organic remains during fossilization processes. We test this hypothesis with long-term experiments (up to 5.5 years) using invertebrate and vertebrate corpses. Once placed on mats, the microbial community coats the corpses and forms a three-dimensional sarcophagus composed of microbial cells and exopolymeric substances (EPS). This coverage provides a template for i) moulding superficial features, resulting in negative impressions, and ii) generating replicas. The impressions of fly setulae, fish scales and frog skin verrucae are shaped mainly by small cells in an EPS matrix. Microbes also replicate delicate structures such as the three successive layers that compose a fish eye. The sarcophagus protects the body integrity, allowing the persistence of inner organs such as the ovaries and digestive apparatus in flies, the swim bladder and muscles in fish, and the bone marrow in frog legs. This study brings strong experimental evidence to the idea that mats favour metazoan fossilization by moulding, replicating and delaying decay. Rapid burial has classically been invoked as a mechanism to explain exceptional preservation. However, mats may play a similar role during early fossilization as they can preserve complex features for a long time.

Abstract. The changes in the trophic state in the Salada de Chiprana (north-eastern Spain) over two quite different seasonal cycles (1989, 1994/95) were studied. During the former cycle, the lake was permanently stratified, and was biogenically meromictic, and in the latter, showed no apparent stratification. The main variables related to the physico-chemical changes observed can be attributed to the effect caused by the increase in the nutrient loading. The large amounts of nutrients (total-N and total-P) and organic matter are due to the use of the lake as a reservoir for water discharged from irrigation. Two remarkable effects of the change are the permanent mixing of the water column and the immobilization of phosphorus in the form of ionic species and solid phases that are not available to the biota especially primary producers (phytoplankton, periphyton, microbial mats). The results of the present study emphasize the fragility of (hyper) saline ecosystems to anthropogenic disturbances such as increases in freshwater inflow and nutrient inputs. Likewise, the study reveals the failure of conservation criteria that have been used to manage this lake, especially those which refer to the control of freshwater, nutrient-rich influents.

Microbial mats have been repeatedly suggested to promote early fossilization of macroorganisms. Yet, experimental simulations of this process remain scarce. Here, we report results of 5 year-long experiments performed onfish carcasses to document the influence of microbial mats on mineral precipitation during early fossilization. Carcasses were initially placed on top of microbial mats. After 2 weeks, fish became coated by the mats forming a compact sarcophagus, which modified the microenvironment close to the corpses. Our results showed that these conditions favored the precipitation of a poorly crystalline silicate phase rich in magnesium. This talc-like mineral phase has been detected in three different locations within the carcasses placed in microbial mats for more than 4 years: (1) within inner tissues, colonized by several bacillary cells; (2) at the surface of bones of the upper face of the corpse buried in the mat; and (3) at the surface of several bones such as the dorsal fin which appeared to be gradually replaced by the Mg-silicate phase. This mineral phase has been previously shown to promote bacteria fossilization. Here we provide first experimental evidence that such Mg-rich phase can also be involved in exceptional preservation of animals.