The Human Metabolome Database or HMDB (https://hmdb.ca) has been providing comprehensive reference information about human metabolites and their associated biological, physiological and chemical properties since 2007. Over the past 15 years, the HMDB has grown and evolved significantly to meet the needs of the metabolomics community and respond to continuing changes in internet and computing technology. This year's update, HMDB 5.0, brings a number of important improvements and upgrades to the database. These should make the HMDB more useful and more appealing to a larger cross-section of users. In particular, these improvements include: (i) a significant increase in the number of metabolite entries (from 114 100 to 217 920 compounds); (ii) enhancements to the quality and depth of metabolite descriptions; (iii) the addition of new structure, spectral and pathway visualization tools; (iv) the inclusion of many new and much more accurately predicted spectral data sets, including predicted NMR spectra, more accurately predicted MS spectra, predicted retention indices and predicted collision cross section data and (v) enhancements to the HMDB’s search functions to facilitate better compound identification. Many other minor improvements and updates to the content, the interface, and general performance of the HMDB website have also been made. Overall, we believe these upgrades and updates should greatly enhance the HMDB’s ease of use and its potential applications not only in human metabolomics but also in exposomics, lipidomics, nutritional science, biochemistry and clinical chemistry.

Akemann, Ipsen and Kieburg recently showed that the squared singular values of products of M rectangular random matrices with independent complex Gaussian entries are distributed according to a determinantal point process with a correlation kernel that can be expressed in terms of Meijer G-functions. We show that this point process can be interpreted as a multiple orthogonal polynomial ensemble. We give integral representations for the relevant multiple orthogonal polynomials and a new double contour integral for the correlation kernel, which allows us to find its scaling limits at the origin (hard edge). The limiting kernels generalize the classical Bessel kernels. For M = 2 they coincide with the scaling limits found by Bertola, Gekhtman, and Szmigielski in the Cauchy-Laguerre two-matrix model, which indicates that these kernels represent a new universality class in random matrix theory.

Abstract. In this paper, we propose a novel representation, called Multiscale Block Local Binary Pattern (MB-LBP), and apply it to face recognition. The Local Binary Pattern (LBP) has been proved to be effective for image representation, but it is too local to be robust. In MB-LBP, the computation is done based on average values of block subregions, instead of individual pixels. In this way, MB-LBP code presents several advantages: (1) It is more robust than LBP; (2) it encodes not only microstructures but also macrostructures of image patterns, and hence provides a more complete image representation than the basic LBP operator; and (3) MB-LBP can be computed very efficiently using integral images. Furthermore, in order to reflect the uniform appearance of MB-LBP, we redefine the uniform patterns via statistical analysis. Finally, AdaBoost learning is applied to select most effective uniform MB-LBP features and construct face classifiers. Experiments on Face Recognition Grand Challenge (FRGC) ver2.0 database show that the proposed MB-LBP method significantly outperforms other LBP based face recognition algorithms.

Most current face recognition systems are designed for indoor, cooperative-user applications. However, even in thus-constrained applications, most existing systems, academic and commercial, are compromised in accuracy by changes in environmental illumination. In this paper, we present a novel solution for illumination invariant face recognition for indoor, cooperative-user applications. First, we present an active near infrared (NIR) imaging system that is able to produce face images of good condition regardless of visible lights in the environment. Second, we show that the resulting face images encode intrinsic information of the face, subject only to a monotonic transform in the gray tone; based on this, we use local binary pattern (LBP) features to compensate for the monotonic transform, thus deriving an illumination invariant face representation. Then, we present methods for face recognition using NIR images; statistical learning algorithms are used to extract most discriminative features from a large pool of invariant LBP features and construct a highly accurate face matching engine. Finally, we present a system that is able to achieve accurate and fast face recognition in practice, in which a method is provided to deal with specular reflections of active NIR lights on eyeglasses, a critical issue in active NIR image-based face recognition. Extensive, comparative results are provided to evaluate the imaging hardware, the face and eye detection algorithms, and the face recognition algorithms and systems, with respect to various factors, including illumination, eyeglasses, time lapse, and ethnic groups.

Background-The incidence of thyroid cancer is rising steadily because of overdiagnosis and overtreatment conferred by widespread use of sensitive imaging techniques for screening. This overall incidence growth is especially driven by increased diagnosis of indolent and welldifferentiated papillary subtype and early-stage thyroid cancer, whereas the incidence of advancedstage thyroid cancer has increased marginally. Thyroid ultrasound is frequently used to diagnose thyroid cancer. The aim of this study was to use deep convolutional neural network (DCNN) models to improve the diagnostic accuracy of thyroid cancer by analysing sonographic imaging data from clinical ultrasounds.Methods-We did a retrospective, multicohort, diagnostic study using ultrasound images sets from three hospitals in China. We developed and trained the DCNN model on the training set, 131 731 ultrasound images from 17 627 patients with thyroid cancer and 180 668 images from 25 325 controls from the thyroid imaging database at Tianjin Cancer Hospital. Clinical diagnosis of the training set was made by 16 radiologists from Tianjin Cancer Hospital. Images from anatomical sites that were judged as not having cancer were excluded from the training set and only individuals with suspected thyroid cancer underwent pathological examination to confirm diagnosis. The model's diagnostic performance was validated in an internal validation set from Tianjin Cancer Hospital (8606 images from 1118 patients) and two external datasets in China (the

Abstract. Effective and real-time face detection has been made possible by using the method of rectangle Haar-like features with AdaBoost learning since Viola and Jones' work [12]. In this paper, we present the use of a new set of distinctive rectangle features, called Multi-block Local Binary Patterns (MB-LBP), for face detection. The MB-LBP encodes rectangular regions' intensities by local binary pattern operator, and the resulting binary patterns can describe diverse local structures of images. Based on the MB-LBP features, a boosting-based learning method is developed to achieve the goal of face detection. To deal with the non-metric feature value of MB-LBP features, the boosting algorithm uses multibranch regression tree as its weak classifiers. The experiments show the weak classifiers based on MB-LBP are more discriminative than Haar-like features and original LBP features. Given the same number of features, the proposed face detector illustrates 15% higher correct rate at a given false alarm rate of 0.001 than haar-like feature and 8% higher than original LBP feature. This indicates that MB-LBP features can capture more information about the image structure and show more distinctive performance than traditional haar-like features, which simply measure the differences between rectangles. Another advantage of MB-LBP feature is its smaller feature set, this makes much less training time.

HOX transcript antisense RNA (HOTAIR), a long intergenic non-coding RNA (lncRNA), functions as a molecular scaffold to link and target the histone modification complexes PRC2 and LSD1, then reprograms chromatin states by coupling histone H3K27 methylation and H3K4 demethylation for epigenetic gene silencing to promote cancer metastasis. It is associated with poor survival in several solid cancers. In this study, we show that HOTAIR expression increased in oral squamous cell carcinoma (OSCC) compared with non-tumor tissue and is associated with metastasis, the stage and histological differentiation. In addition, overexpression of HOTAIR indicated poor overall survival (OS) and disease-free survival (DFS) in OSCC patients. Knockdown of HOTAIR by siRNA in OSCC cells decreased cell proliferation and colony formation, increased cell invasion and migration, and induced apoptosis in vitro. Furthermore, significant negative correlation between HOTAIR levels and E-cadherin levels was found in OSCC tissues and cell lines, and HOTAIR contributed to the regulation of E-cadherin through binding to EZH2 and H3K27me3 with the E-cadherin promoter. Our findings suggest that HOTAIR expression is associated with OSCC and may be one of critical targets in progression and metastasis, and an indicator of poor survival in OSCC.

The prognosis of advanced oral squamous cell carcinoma (OSCC) patients remains dismal, and a better understanding of the underlying mechanisms is critical for identifying effective targets with therapeutic potential to improve the survival of patients with OSCC. This study aims to clarify the clinical and biological significance of metastasis-associated long non-coding RNA, metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) in OSCC. We found that MALAT1 is overexpressed in OSCC tissues compared to normal oral mucosa by real-time PCR. MALAT1 served as a new prognostic factor in OSCC patients. When knockdown by small interfering RNA (siRNA) in OSCC cell lines TSCCA and Tca8113, MALAT1 was shown to be required for maintaining epithelial-mesenchymal transition (EMT) mediated cell migration and invasion. Western blot and immunofluorescence staining showed that MALAT1 knockdown significantly suppressed N-cadherin and Vimentin expression but induced E-cadherin expression in vitro. Meanwhile, both nucleus and cytoplasm levels of β-catenin and NF-κB were attenuated, while elevated MALAT1 level triggered the expression of β-catenin and NF-κB. More importantly, targeting MALAT1 inhibited TSCCA cell-induced xenograft tumor growth in vivo. Therefore, these findings provide mechanistic insight into the role of MALAT1 in regulating OSCC metastasis, suggesting that MALAT1 is an important prognostic factor and therapeutic target for OSCC.