a b s t r a c tIt is suggested that mountain lions have suffered a bottleneck and lost their genetic diversity in an area in southern Brazil. In this study, we correlated landscape connectivity and patterns of gene flow to identify landscape permeability and possible sources of migrants for the population of mountain lions in southern Brazil, using circuit theory. Population structure was analyzed with Bayesian methods, and density and parentage relationships were also estimated, to evaluate the population genetic profile. We did not find genetic structure between samples, and landscape analysis indicated that all individuals were connected by areas that are permeable to mountain lion movements. The estimated population density was low, 0.09 and 0.32 mountain lions/100 km 2 (N e /N = 0.11 and N e /N = 0.4, respectively). Parentage results indicated that individuals killed in the same spot were not related, suggesting that mountain lions are still able to disperse through the landscape. Evidence indicates that severe habitat loss and consequent illegal hunting were responsible for a bottleneck and consequent loss of genetic variability, we demonstrated that the landscape still allows mountain lions to move, and that protected areas in southern Brazil may be acting as a source of migrants. This information indicates that conservation actions to reduce illegal hunting and to monitor protected areas are important to understand the impact of hunted areas on source areas.

The Brazilian Atlantic Rain Forest, one of the most endangered ecosystems worldwide, is also among the most important hotspots as regards biodiversity. Through intensive logging, the initial area has been reduced to around 12% of its original size. In this study we investigated the genetic variability and structure of the mountain lion, Puma concolor. Using 18 microsatellite loci we analyzed evidence of allele dropout, null alleles and stuttering, calculated the number of allele/locus, PIC, observed and expected heterozygosity, linkage disequilibrium, Hardy-Weinberg equilibrium, FIS, effective population size and genetic structure (MICROCHECKER, CERVUS, GENEPOP, FSTAT, ARLEQUIN, ONESAMP, LDNe, PCAGEN, GENECLASS software), we also determine whether there was evidence of a bottleneck (HYBRIDLAB, BOTTLENECK software) that might influence the future viability of the population in south Brazil. 106 alleles were identified, with the number of alleles/locus ranging from 2 to 11. Mean observed heterozygosity, mean number of alleles and polymorphism information content were 0.609, 5.89, and 0.6255, respectively. This population presented evidence of a recent bottleneck and loss of genetic variation. Persistent regional poaching constitutes an increasing in the extinction risk.