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Functional magnetic resonance imaging (fMRI) is a widely used tool in neuroscience to detect neurally evoked responses, e.g. the blood oxygenation level-dependent (BOLD) signal. Typically, BOLD fMRI has millimeter spatial resolution and temporal resolution of one to few seconds. To study the sub-millimeter structures and activity of the cortical gray matter, the field needs an fMRI method with high spatial and temporal resolution. Line-scanning fMRI achieves very high spatial resolution and high sampling rate, at the cost of a sacrifice in volume coverage. Here, we present a human line-scanning implementation on a 7T MRI system. First, we investigate the quality of the saturation pulses that suppress MR signal outside the line. Second, we established the best coil combination for reconstruction. Finally, we applied the line-scanning method in the occipital lobe during a visual stimulation task, showing BOLD responses along cortical depth, every 250 µm with a 200 ms repetition time (TR). We found a good correspondence of t-statistics values with 2D gradient-echo echo planar imaging (GE-EPI) BOLD fMRI data with the same temporal resolution and voxel volume (R = 0.6 ± 0.2). In summary, we demonstrate the feasibility of line-scanning in humans and this opens line-scanning fMRI for applications in cognitive and clinical neuroscience.

To be able to examine dynamic and detailed brain functions, the spatial and temporal resolution of 7 T MRI needs to improve. In this study, it was investigated whether submillimeter multishot 3D EPI fMRI scans, acquired with high-density receive arrays, can benefit from a 2D CAIPIRINHA sampling pattern, in terms of noise amplification (g-factor), temporal SNR and fMRI sensitivity. High-density receive arrays were combined with a shot-selective 2D CAIPIRINHA implementation for multishot 3D EPI sequences at 7 T. In this implementation, in contrast to conventional inclusion of extra k z gradient blips, specific EPI shots are left out to create a CAIPIRINHA shift and reduction of scan time. First, the implementation of the CAIPIRINHA sequence was evaluated with a standard receive setup by acquiring submillimeter whole brain T 2 *-weighted anatomy images. Second, the CAIPIRINHA sequence was combined with high-density receive arrays to push the temporal resolution of submillimeter 3D EPI fMRI scans of the visual cortex. Results show that the shot-selective 2D CAIPIRI-NHA sequence enables a reduction in scan time for 0.5 mm isotropic 3D EPI T 2 *weighted anatomy scans by a factor of 4 compared with earlier reports. The use of the 2D CAIPIRINHA implementation in combination with high-density receive arrays, enhances the image quality of submillimeter 3D EPI scans of the visual cortex at high acceleration as compared to conventional SENSE. Both the g-factor and temporal SNR improved, resulting in a method that is more sensitive to the fMRI signal. Using this method, it is possible to acquire submillimeter single volume 3D EPI scans of the visual cortex in a subsecond timeframe. Overall, high-density receive arrays in combination with shot-selective 2D CAIPIRINHA for 3D EPI scans prove to be valuable for reducing the scan time of submillimeter MRI acquisitions. K E Y W O R D S3D EPI, 7T, CAIPI, high resolution, receive arrays, shot selective, visual cortex Abbreviations used: BOLD, blood oxygenation level-dependent; CAIPIRINHA, controlled aliasing in parallel imaging; EPI, echo-planar imaging; FOV, field of view; MB, multiband; RF, radio frequency; SENSE, sensitivity encoding; tSNR, temporal signal-to-noise ratio.

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Objective Neurons cluster into sub-millimeter spatial structures and neural activity occurs at millisecond resolutions; hence, ultimately, high spatial and high temporal resolutions are required for functional MRI. In this work, we implemented a spin-echo line-scanning (SELINE) sequence to use in high spatial and temporal resolution fMRI. Materials and methods A line is formed by simply rotating the spin-echo refocusing gradient to a plane perpendicular to the excited slice and by removing the phase-encoding gradient. This technique promises a combination of high spatial and temporal resolution (250 μm, 500 ms) and microvascular specificity of functional responses. We compared SELINE data to a corresponding gradient-echo version (GELINE). Results We demonstrate that SELINE showed much-improved line selection (i.e. a sharper line profile) compared to GELINE, albeit at the cost of a significant drop in functional sensitivity. Discussion This low functional sensitivity needs to be addressed before SELINE can be applied for neuroscientific purposes.

We implemented prospective motion-correction (PMC) for line-scanning fMRI. In line-scanning, online motion correction is needed since 1-dimensional data do not allow motion detection in every dimension and the limited coverage makes this approach sensitive to spin-history artifacts or scanning outside the area of interest, in the presence of motion. We compared three versions of PMC and three ways of managing the T1-driven return to equilibrium (T1-transient) introduced by the navigators, in the functional data analysis. We opted for a water-excitation navigator as the best alternative, and showed that the T1-transient can be successfully overcome in the functional analysis.

We implemented spin-echo line-scanning (SELINE) fMRI through a simple rotation of the spin-echo refocusing gradient to a plane perpendicular to the excited slice and removing the phase encode gradient. This technique promises a combination of high spatio-temporal resolution and specificity of functional responses to the microvasculature. We compared SELINE data to the corresponding gradient-echo version (GELINE). We demonstrate that SELINE showed much improved line selection compared to GELINE, albeit at the cost of a significant drop in functional sensitivity. The low functional sensitivity needs to be addressed before SELINE can be applied.