In this article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational
In this article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities. The paper proceeds and describes developments related to explorations of potential energy surfaces. Here we present methods for the optimization of conical intersections, the simulation of adiabatic and nonadiabatic molecular dynamics and interfaces to tools for semiclassical and quantum mechanical nuclear dynamics. Furthermore, the article describes features unique to simulations of spectroscopic and magnetic phenomena such as the exact semiclassical description of the interaction between light and matter, various X-ray processes, magnetic circular dichroism and properties. Finally, the paper describes a number of built-in and add-on features to support the OpenMolcas platform with post calculation analysis and visualization, a multiscale simulation option using frozen-density embedding theory and new electronic and muonic basis sets.
Direct 11-cis to all-trans retinal photoisomerization within rhodopsin is well known to be the initial chemical reaction triggering the process of vision in mammalians, such as bovine. Nevertheless, deep-sea fish are known to use chlorophyll derivatives as photosensitizers in order to see deep-red light, at wavelengths where retinal does not absorb. Also, some photodynamic therapy treatments were shown to enhance the vision of patients in dim light conditions. Energy transfer from the photosensitizer to rhodopsin was therefore proposed as a mechanism to populate the triplet state of the retinal chromophore. Herein, by means of hybrid quantum mechanicscoupled-molecular mechanics modeling techniques, we give insights into the possible energy mechanism and describe the retinal isomerization mediated by the lowest-lying triplet state. Especially, we show how a few kcal/mol energy barrier separates a T 1 minimum from a S 0 /T 1 intersection region, hence proposing an equilibrium between phosphorescence and isomerization processes. Moreover, the eventual self-production of singlet oxygen, constituting a potential danger for the integrity of rhodopsin, is discussed.
Hydantoin-Based Molecular Photoswitches. -The synthesis, photochemical and photophysical properties, and photoisomerization mechanism of the title compounds are reported. -(MARTINEZ-LOPEZ, D.; YU, M.-L.; GARCIA-IRIEPA, C.; CAMPOS, P. J.; FRUTOS, L. M.; GOLEN, J. A.; RASAPALLI, S.; SAMPEDRO*, D.; J. Org. Chem. 80 (2015) 8, 3929-3939, http://dx.
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