No abstract

No abstract

In this study, the complete genome sequences of seven equine group A rotavirus (RVA) strains (RVA/Horse-tc/GBR/L338/1991/G13P [18] [12] from South Africa) were determined. Multiple novel genotypes were identified and genotype numbers were assigned by the Rotavirus Classification Working Group: R9 (VP1), C9 (VP2), N9 (NSP2), T12 (NSP3), E14 (NSP4), and H7 and H11 (NSP5). The genotype constellation of L338 was unique: G13-P[18]-I6-R9-C9-M6-A6-N9-T12-E14-H11. The six remaining equine RVA strains showed a largely conserved genotype constellation: G3/G14-P[12]-I2/I6-R2-C2-M3-A10-N2-T3-E2/E12-H7, which is highly divergent from other known non-equine RVA genotype constellations. Phylogenetic analyses revealed that the sequences of these equine RVA strains are related distantly to nonequine RVA strains, and that at least three lineages exist within equine RVA strains. A small number of reassortment events were observed. Interestingly, the three RVA strains from Argentina possessed the E12 genotype, whereas the three RVA strains from Ireland and South Africa possessed the E2 genotype. The unusual E12 genotype has until now only been described in Argentina among RVA strains collected from guanaco, cattle and horses, suggesting geographical isolation of this NSP4 genotype. This conserved genetic configuration of equine RVA strains could be useful for future vaccine development or improvement of currently used equine RVA vaccines. INTRODUCTIONEquine group A rotavirus (RVA) strains were first detected in diarrhoeic foals in England in 1975(Flewett et al., 1975 and are a major cause of dehydrating diarrhoea in young 3Present address: Deltamune (Pty) Ltd, 248 Jean Avenue, Lyttelton, Centurion, 0140, South Africa.The GenBank/EMBL/DDBJ accession numbers for the equine rotavirus strains described in this study are JF712555-JF712565, JF712566-JF712576, JF712577-JF712587, JN872865-JN872875, JQ345489-JQ345499 and JN903507-JN903528. foals (Browning & Begg, 1996;Frederick et al., 2009; Imagawa et al., 1991;Saif et al., 1994). Serological data from Japan, the USA and France suggest that RVA is a ubiquitous pathogen in horse populations (Conner & Darlington, 1980;Imagawa et al., 1982;Pearson et al., 1982;Takahashi et al., 1979).RVA strains are icosahedral, non-enveloped viruses possessing a genome of 11 segments of dsRNA. The two outer capsid proteins, VP7 and VP4, elicit neutralizing antibodies independently and are used to differentiate RVA strains into G-types (glycoprotein) and P-types (proteasesensitive), respectively (Ciarlet & Estes, 2002 (Browning et al., 1991a). L338 was shown to possess the unique G13 and P[18] genotypes and a highly divergent NSP1 gene sequence, and to be distinct from other human and animal RVA strains by using RNA-RNA hybridization assays (Browning et al., 1991a; Iša & Snodgrass, 1994;Kojima et al., 1996;Taniguchi et al., 1994;Wu et al., 1993). In addition, a limited number of porcine-, bovineand feline-like RVA strains have been detected in horses. Examples include the G5P [7] RVA strain RVA/Horse-tc/ ...

No abstract

The occurrence of heavy metals in industrial wastewater is unanimously considered a major concern since these pollutants cannot be chemically or biologically degraded and therefore have long residence times. Phytoremediation is one of the most widespread biotechnological applications worldwide, which consists in the use of plants to adsorb or accumulate a broad range of inorganic and organic contaminants from water, air, and soil. To improve the cost-effectiveness and sustainability of phytoremediation-based wastewater treatment systems, it is essential to use plants that are not only efficient in pollutants removal, but also abundant and easily accessible at the target site, requiring no-special culture conditions. In this study, we have evaluated the capacity of naturally-occurring aquatic macrophytes of the genus Salvinia (classified as Salvinia biloba) to phytoremediate water artificially contaminated with cadmium (Cd), copper (Cu), lead (Pb), or zinc (Zn) at equal molar concentrations (50 ± 2 and 100 ± 1 µM), during 48 h. Additionally, photosynthetic and antioxidant pigments (carotenoids, chlorophylls, anthocyanins, and flavonoids), and soluble carbohydrate content was also measured in floating leaves of Salvinia specimens to appraise heavy metals phytotoxicity. Elemental analyses to plant tissue indicate that S. biloba was able to bioconcentrate all four metals analyzed, albeit with different degrees of affinity. In addition, the mechanisms of uptake and detoxification were dissimilar for each ion, resulting in greater removal of Cu and Pb (≥96%, at both concentrations), in comparison to Cd (79 ± 4% and 56 ± 2% for 50 ± 2 and 100 ± 1 µM, respectively) and Zn (77 ± 5% and 70 ± 4% for 50 ± 2 and 100 ± 1 µM, respectively). Accordingly, the assessment of the selected physiological parameters in floating leaves suggests that different response mechanisms are triggered by each metal in S. biloba to counteract the corresponding toxicological stress.

No abstract

Research highlights: (1) Ecosystem development assessed in an afforested post-mining site. (2) Soil organic carbon (SOC) and total nitrogen (TN) stock reached close to the reference forest site after 25 years of afforestation. (3) Integrated mine soil quality index is developed to assess the reclamation success. Background and Objectives: Estimation of the mine soil quality is one of the most important criterions for evaluating the reclamation success and restoration of novel ecosystems of the post-industrial degraded lands. The aim of this long-term experiment was to investigate the influence of revegetation on Technosol (defined as anthropogenic soil resulted from reclamation of mine spoil materials) as the basic ecosystem development. Materials and Methods: A field study was carried out in the chronosequence afforested post-mining sites (5, 10, 25 years) and compared with natural forest site. We assessed the physicochemical properties and nutrient stock of mine soil and estimated general mine soil quality by using an integrated mine soil quality index (IMSQI). The studies were fully randomized in the chronosequence of afforested post-mining sites. Results: Nutrient dynamics and soil properties (physicochemical and biological) were recovered with the increase age of reclamation. Soil organic carbon (SOC) stock significantly increased from 9.11 Mg C ha−1 in 5 years to 41.37 Mg C ha−1 after 25 years of afforestation. Likewise, total nitrogen (TN) stock significantly increased from 1.06 Mg N ha−1 in 5 years to 4.45 Mg N ha−1 after 25 years of revegetation. Ecosystem carbon pool enhanced at a rate of 6.2 Mg C ha−1 year−1. A Principal Component Analysis (PCA)-based IMSQ index was employed to assess the reclamation success. The most influential properties controlling the health of reclaimed coal mine soil are fine earth fraction, moisture content, SOC and dehydrogenase activity. IMSQ index values are validated with vegetation characteristics. The estimated IMSQI ranged from 0.455 in 5-year-old (RMS5) to 0.746 in 25-year-old reclaimed dump (RMS25). Conclusions: A 25-year-old reclaimed dump having greater IMSQI (0.746) than reference forest soils (0.695) suggested the aptness of revegetation to retrieve soil quality and function in derelict mine land.

The arrival of sequence-specific endonucleases that allow genome editing has shaken the pillars of basic and applied plant biology. Clustered regularly interspaced palindromic repeats (CRISPR) is a revolutionary genome-engineering tool that enables the enhancement of targeted traits in plants. Numerous plants, including energy crops, known for their potential to tolerate, immobilize, and stabilize inorganic and organic pollutants, have already been edited using different CRISPR systems. Moreover, a large array of genes responsible for increased metal tolerance, metal uptake and hyperaccumulation have already been identified. Thus, the CRISPR-mediated genome reprogramming of plants, including its use in gene expression regulation through transcriptional repression or activation (CRISPRi and CRISPRa), could be of paramount importance for phytoremediation. The simplicity, inexpensiveness, and capabilities of this gene editing technique could soon be used to enhance plants and bacteria involved in phytotechnologies, such as phystabilization, phytoextraction, phytomining, phytovolatilization, and bio-energy generation. In this brief viewpoint piece, we posit some of the potential benefits of CRISPR for phytoremediation.