The community structure of putative aerobic ammonia-oxidizing archaea (AOA) was explored in two oxygen-deficient ecosystems of the eastern South Pacific: the oxygen minimum zone off Peru and northern Chile (11°S-20°S), where permanent suboxic and low-ammonium conditions are found at intermediate depths, and the continental shelf off central Chile (36°S), where seasonal oxygen-deficient and relatively high-ammonium conditions develop in the water column, particularly during the upwelling season. The AOA community composition based on the ammonia monooxygenase subunit A (amoA) genes changed according to the oxygen concentration in the water column and the ecosystem studied, showing a higher diversity in the seasonal low-oxygen waters. The majority of the archaeal amoA genotypes was affiliated to the uncultured clusters A (64%) and B (35%), with Cluster A AOA being mainly associated with higher oxygen and ammonium concentrations and Cluster B AOA with permanent oxygen- and ammonium-poor waters. Q-PCR assays revealed that AOA are an abundant community (up to 10(5) amoA copies ml(-1) ), while bacterial amoA genes from β proteobacteria were undetected. Our results thus suggest that a diverse uncultured AOA community, for which, therefore, we do not have any physiological information, to date, is an important component of the nitrifying community in oxygen-deficient marine ecosystems, and particularly in rich coastal upwelling ones.

We assessed the abundance and molecular phylogeny of archaeoplankton in the oxygen minimum zone (OMZ) of the eastern tropical South Pacific, using specific-probe hybridization and phylogenetic analysis of the SSU-rRNA gene. Euryarchaea from Marine Group-II (MG-II) were most abundant in the surface oxic layer, representing 4.0±2.0% of the total picoplankton, while crenarchaea from Group I.1a (G-I.1a) peaked at the oxyclines, with a relative abundance of 8.1±4.3% (upper oxycline). In most of the stations, the abundance of both the groups decreased at the core of the OMZ, where a secondary maximum in cell density is commonly observed. The majority of the phylotypes affiliated with one of three groups: MG-II, euryarchaeal Marine Group-III (MG-III) and G-I.1a (75.9%, 12.8% and 10.3%, respectively). While MG-II phylotypes were found throughout the water column and G-I.1a ones were predominantly found within the oxyclines, MG-III phylotypes came almost exclusively from the OMZ core. Higher archaeal richness was found within the OMZ, with some of the exclusive lineages grouping with sequences from the deep ocean and hydrothermal vents. Moreover, G-I.1a sequences from the OMZ grouped into a different subcluster from the aerobic ammonium-oxidizer Nitrosopumilus maritimus. Thus, the community structure of archaeoplankton in OMZs is rich and distinct, with G-I.1a members particularly prominent at the oxyclines.

Using in situ hydro-chemical data and MODIS-SeaWiFS ocean color images as a proxy of river plumes and phytoplankton biomass from 2000 to 2014, this study documents the temporal co-variability of river discharge, plume area, nitrate and phosphate export and phytoplankton biomass in the coastal waters off Central Chile (33 •-37 • S). Five major rivers (Maipo, Mataquito, Maule, Itata, and Biobío) drain into this region with annual mean discharge ranging from 120 to 1000 m 3 s −1. River discharge and coastal plume area present a marked seasonal cycle, reaching maximum values during the winter rainy season (June-September). Export of riverine nutrients also peaks in winter, leading to an increase in phytoplankton biomass within the plumes that can be twice larger than the background values in coastal areas away from the river mouths. Wintertime river discharge, plume area and nutrient export are also correlated at interannual time scales. During a recent extended dry period (2010-2014), river discharges, plume areas and nutrient export clearly decreased by about 50% compared to historical values, reducing significantly the size of the chlorophyll pool within plumes off Central Chile during winter. The potential impacts of droughts are discussed in terms of coastal ecology and primary production, a highly relevant issue considering the projections of a dry climate over Central Chile in the future. Systematic evidence of mega-drought effects upon coastal productivity still does not exist, but it remains a priority to further investigate and quantify these impacts.