Animals produce a wide array of sounds with highly variable acoustic structures. It is possible to understand the causes and consequences of this variation across taxa with phylogenetic comparative analyses. Acoustic and evolutionary analyses are rapidly increasing in sophistication such that choosing appropriate acoustic and evolutionary approaches is increasingly difficult. However, the correct choice of analysis can have profound effects on output and evolutionary inferences. Here, we identify and address some of the challenges for this growing field by providing a roadmap for quantifying and comparing sound in a phylogenetic context for researchers with a broad range of scientific backgrounds. Sound, as a continuous, multidimensional trait can be particularly challenging to measure because it can be hard to identify variables that can be compared across taxa and it is also no small feat to process and analyse the resulting high‐dimensional acoustic data using approaches that are appropriate for subsequent evolutionary analysis. Additionally, terminological inconsistencies and the role of learning in the development of acoustic traits need to be considered. Phylogenetic comparative analyses also have their own sets of caveats to consider. We provide a set of recommendations for delimiting acoustic signals into discrete, comparable acoustic units. We also present a three‐stage workflow for extracting relevant acoustic data, including options for multivariate analyses and dimensionality reduction that is compatible with phylogenetic comparative analysis. We then summarize available phylogenetic comparative approaches and how they have been used in comparative bioacoustics, and address the limitations of comparative analyses with behavioural data. Lastly, we recommend how to apply these methods to acoustic data across a range of study systems. In this way, we provide an integrated framework to aid in quantitative analysis of cross‐taxa variation in animal sounds for comparative phylogenetic analysis. In addition, we advocate the standardization of acoustic terminology across disciplines and taxa, adoption of automated methods for acoustic feature extraction, and establishment of strong data archival practices for acoustic recordings and data analyses. Combining such practices with our proposed workflow will greatly advance the reproducibility, biological interpretation, and longevity of comparative bioacoustic studies.

The whistles of Atlantic spotted dolphins have been studied in a few localities of the North Atlantic Ocean and those studies revealed that the species emits whistles within a broad frequency range, with a high number of inflection points and presence of harmonics. In the South Atlantic Ocean, there is no information about the sounds produced by Atlantic spotted dolphins. A total of 1092 whistles emitted by free-ranging Atlantic spotted dolphins in Southeastern Brazilian coastal waters were analyzed. Whistles recorded in this study had a broad frequency range from 1.15 to 23.44 kHz. Whistles without harmonics were frequently emitted (N=701; 64.2%) and those signals with zero up to two inflection points corresponded to 94% of all whistles. Some differences in whistle characteristics (inflection points and duration) were found in relation to areas in North Atlantic Ocean and whistles were shorter and with a smaller number of inflection points in Brazil. Whistles produced by Atlantic spotted dolphins varied between the two behavioral states in which dolphins were engaged. Whistles were more frequently emitted when dolphins presented behaviors that included fast movement at surface, prey pursuit, aerial behavior, and physical contact. In these situations, whistles were on average longer and had higher frequency parameters than those emitted when animals were engaged in slowly and moderate traveling. The findings presented herewith reveal that dolphins modified whistle structures within behavioral states.

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