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In many aquatic ecosystems, most microbes live in matrix-enclosed biofilms and contribute substantially to energy flow and nutrient cycling. Little is known, however, about the coupling of structure and dynamics of these biofilms to ecosystem function. Here we show that microbial biofilms changed the physical and chemical microhabitat and contributed to ecosystem processes in 30-m-long stream mesocosms. Biofilm growth increased hydrodynamic transient storage-streamwater detained in quiescent zones, which is a major physical template for ecological processes in streams-by 300% and the retention of suspended particles by 120%. In addition, by enhancing the relative uptake of organic molecules of lower bioavailability, the interplay of biofilm microarchitecture and mass transfer changed their downstream linkage. As living zones of transient storage, biofilms bring hydrodynamic retention and biochemical processing into close spatial proximity and influence biogeochemical processes and patterns in streams. Thus, biofilms are highly efficient and successful ecological communities that may also contribute to the influence that headwater streams have on rivers, estuaries and even oceans through longitudinal linkages of local biogeochemical and hydrodynamic processes.

A study of 16 streams in eastern North America shows that riparian deforestation causes channel narrowing, which reduces the total amount of stream habitat and ecosystem per unit channel length and compromises in-stream processing of pollutants. Wide forest reaches had more macroinvertebrates, total ecosystem processing of organic matter, and nitrogen uptake per unit channel length than contiguous narrow deforested reaches. Stream narrowing nullified any potential advantages of deforestation regarding abundance of fish, quality of dissolved organic matter, and pesticide degradation. These findings show that forested stream channels have a wider and more natural configuration, which significantly affects the total in-stream amount and activity of the ecosystem, including the processing of pollutants. The results reinforce both current policy of the United States that endorses riparian forest buffers as best management practice and federal and state programs that subsidize riparian reforestation for stream restoration and water quality. Not only do forest buffers prevent nonpoint source pollutants from entering small streams, they also enhance the in-stream processing of both nonpoint and point source pollutants, thereby reducing their impact on downstream rivers and estuaries.

Plug-flow biofilm reactors colonized by microorganisms in streamwater were used to measure the concentration and composition of biodegradable dissolved organic C (BDOC) in White Clay Creek. During the 4-month study period, DOC ranged from 0.8 to 10.4 mg C liter-' and was, on average, composed of 75% humic substances, 13% carbohydrates, 2% amino acids, and 18% > 100 kDa. The carbohydrates were predominantly polysaccharides, nearly all amino acids were present in the combined form, and most carbohydrates and amino acids were humic bound. BDOC ranged from 0.2 to 2.9 mg C liter-', averaged 25% of the DOC, and was composed of 75% humic substances, 30% carbohydrates, 4% amino acids, and 39% DOC >lOO kDa. The carbohydrate portion of the BDOC was primarily polysaccharide or humic bound. Similarly, the amino acid portion of the BDOC was overwhelmingly present in the combined form and primarily humic bound. Glycine and aspartic acid were the dominant amino acids in White Clay Creek DOC and in the BDOC pool. Our data broaden the perspective on substrates important to microbial metabolism and energy flow in streams and provide the first direct evidence that humic substances, although largely refractory, are an important component of streamwater BDOC.Dissolved organic matter (DOM) comprises most of the reduced carbon in aquatic ecosystems and provides energy and carbon resources for the metabolism of heterotrophic bacteria. Not all DOM is biologically labile or even biodegradable. Although numerous investigations in both freshwater and marine environments have reported on the quantity and composition of DOM, fewer studies have addressed the biodegradable fraction. Identifying biodegradable DOM (BDOM) constituents and quantifying their contribution to heterotrophic metabolism can increase our understanding of ecosystem function and bacterial ecophysiology.From a limited number of studies we know that BDOM in streams and rivers includes both low-molecular-weight (Kaplan and Bott 1983) and high-molecular-weight (Meyer

Current velocity affected the architecture and dynamics of natural, multiphyla, and cross-trophic level biofilms from a forested piedmont stream. We monitored the development and activity of biofilms in streamside flumes operated under two flow regimes (slow [0.065 m s ؊1 ] and fast [0.23 m s ؊1 ]) by combined confocal laser scanning microscopy with cryosectioning to observe biofilm structure and composition. Biofilm growth started as bacterial microcolonies embedded in extracellular polymeric substances and transformed into ripple-like structures and ultimately conspicuous quasihexagonal networks. These structures were particularly pronounced in biofilms grown under slow current velocities and were characterized by the prominence of pennate diatoms oriented along their long axes to form the hexagons. Microstructural heterogeneity was dynamic, and biofilms that developed under slower velocities were thicker and had larger surface sinuosity and higher areal densities than their counterparts exposed to higher velocities. Surface sinuosity and biofilm fragmentation increased with thickness, and these changes likely reduced resistance to the mass transfer of solutes from the water column into the biofilms. Nevertheless, estimates of dissolved organic carbon uptake and microbial growth suggested that internal cycling of carbon was more important in thick biofilms grown in slow flow conditions. High-pressure liquid chromatography-pulsed amperometric detection analyses of exopolysaccharides documented a temporal shift in monosaccharide composition as the glucose levels decreased and the levels of rhamnose, galactose, mannose, xylose, and arabinose increased. We attribute this change in chemical composition to the accumulation of diatoms and increased incorporation of detrital particles in mature biofilms.

We investigated dissolved organic matter (DOM) metabolism by employing plug-flow biofilm reactors and ultrahigh resolution mass spectrometry of DOM isolated by C 18 extraction in two forested stream ecosystems, a low DOM tropical stream sampled at baseflow and a higher DOM temperate stream sampled during a storm. On passage through the bioreactors, DOM concentrations in the tropical stream sample declined by 22%, whereas they declined by 42% in the temperate stream sample. The extracted DOM was subjected to electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry to obtain information on molecular weight distributions and elemental compositions for the thousands of compounds whose masses are calculated with sufficient accuracy to allow calculation of unique elemental formulas. In both streams, metabolism modifies DOM to lower molecular weight molecules, and oxygen-rich molecules are selectively biodegraded. Applying van Krevelen analyses for the unique elemental formulas of DOM constituents revealed that hydrogen-deficient molecules with low H : C ratios (assigned to black carbon-derived molecules) are present and generally not metabolized. Black carbon molecules are refractory to biodegradation compared with other components of DOM, supporting the suggestion that black carbon molecules in DOM flow to the ocean without experiencing significant microbial degradation.Dissolved organic matter (DOM) provides energy and carbon for microorganisms in aquatic ecosystems, especially heterotrophic bacteria. Understanding controls on the processes of DOM uptake and metabolism enhances our understanding of aquatic food webs. Similarly, describing the chemical composition of the biodegradable component of DOM (BDOM) helps clarify how heterotrophic bacteria obtain energy and nutrients. Consequently, there have been numerous studies on the utilization of DOM by microorganisms where bioassays, combined with bulk parameters and molecular-level parameters, have been used to study the biologically labile portion of DOM.Bulk parameters such as DOC concentration, elemental composition, oxidation state of DOM, and dissolved oxygen concentration, as well as molecular-level analyses such as

Diel fluctuations in stream water temperature and chemistry, microbial biomass, and bacterial activity were measured in White Clay Creek, Pennsylvania, during vernal algal blooms in three different years. DOC concentrations increased 24-37% over early morning minima and temperature increased nearly 10°C over a 7-10-h period. Total carbohydrates and monosaccharides exhibited irregular fluctuations with total carbohydrates showing concentration peaks in the morning and afternoon. Acetate concentrations were highest in midafternoon, while the concentration pattern for primary amines differed from the DOC pattern with highest values at midnight. No distinct diel patterns were found for streambed ATP, GTP : ATP, Chl a, and total or active bacteria, although significant year-to-year and between-habitat differences were observed. Bacterial activity, measured by phospholipid biosynthesis, total lipid biosynthesis, respiration, and incorporation of [3H]thymidine into DNA increased 1.4-fold to 3.0-fold from morning to afternoon. Microcosm experiments indicated that the activity of bacteria attached to sediments was more sensitive to increases in water temperature than to changes in water chemistry, whereas bacteria attached to porcelain disks responded to the influences of both temperature and water chemistry.