Protein synthesis and autophagic degradation are regulated in an opposite manner by mammalian target of rapamycin (mTOR), whereas under certain conditions it would be beneficial if they occured in unison to handle rapid protein turnover. We observed a distinct cellular compartment at the trans-side of the Golgi apparatus, the ‘TOR-autophagy spatial coupling compartment’ (TASCC), where (auto)lysosomes and mTOR accumulated during Ras-induced senescence. mTOR recruitment to the TASCC was amino acid- and Rag guanosine triphosphatase (GTPase)-dependent, and disruption of mTOR localization to the TASCC suppressed interleukin-6/8 synthesis. TASCC-formation was observed during macrophage differentiation and in glomerular podocytes; both displayed increased protein secretion. The spatial coupling of cells’ catabolic and anabolic machinery could augment their respective functions and facilitate the mass synthesis of secretory proteins.

The International Stem Cell Initiative characterized 59 human embryonic stem cell lines from 17 laboratories worldwide. Despite diverse genotypes and different techniques used for derivation and maintenance, all lines exhibited similar expression patterns for several markers of human embryonic stem cells. They expressed the glycolipid antigens SSEA3 and SSEA4, the keratan sulfate antigens TRA-1-60, TRA-1-81, GCTM2 and GCT343, and the protein antigens CD9, Thy1 (also known as CD90), tissue-nonspecific alkaline phosphatase and class 1 HLA, as well as the strongly developmentally regulated genes NANOG, POU5F1 (formerly known as OCT4), TDGF1, DNMT3B, GABRB3 and GDF3. Nevertheless, the lines were not identical: differences in expression of several lineage markers were evident, and several imprinted genes showed generally similar allele-specific expression patterns, but some gene-dependent variation was observed. Also, some female lines expressed readily detectable levels of XIST whereas others did not. No significant contamination of the lines with mycoplasma, bacteria or cytopathic viruses was detected.

Field studies indicate that natural phytoplankton populations may release very signi¢cant amounts (204 0%) of newly assimilated dissolved inorganic nitrogen (DIN) as dissolved organic nitrogen (DON). In laboratory cultures, however, it is usually possible to account for at least 90% of nitrogen added to the system as DIN plus cell nitrogen. Here we show that the bulk of the missing nitrogen may be accounted for as dissolved free and dissolved combined amino acids. In cultures (which usually have a biomass density at least an order of magnitude greater than is present in o¡shore waters), the contribution of DON to system nitrogen thus appears to be minor. It is proposed that this di¡erence may be explained if the levels of DON represent equilibrium between release^leakage and transport back into the algae. It is demonstrated, using a dynamic model of algal nitrogen physiology, that this mechanism can explain both laboratory and ¢eld observations. Simulations of incubations with DI 15 N reproduce the reported levels of loss in ¢eld incubations. However, because of isotope disequilibria between system components the 15 N protocol may signi¢cantly overestimate the net loss of nitrogen from the algal cells. The arguments apply equally to studies of bacterial production of DON and to questions concerning the release of other dissolved organics by healthy phytoplankton. The signi¢cance of dynamic equilibria between the organisms and the medium may be missed in laboratory studies conducted with high biomass cultures.

A number of species of coccolithophorid phytoplankton precipitate calcite inside intracellular vesicles (coccolith vesicles). They can form vast blooms under certain conditions, and account for major fluxes of inorganic carbon (Ci) to the ocean floor. The functions of calcification have been debated for many years, and a role in carbon acquisition has been proposed by several workers. The precipitation of calcite from HCO3- involves the production of protons that can potentially be used to facilitate the use of external HCO3- as a photosynthetic substrate. For this function to be feasible, certain criteria must be met. HCO3- (rather than CO32–) should be the external substrate for calcification, photosynthesis should be facilitated by HCO3- in calcifying cells when CO2 availability is limiting, and the transport of Ci and Ca2+ to the site of calcification should be energetically and kinetically feasible. Considerable evidence exists for HCO3- as the substrate for calcification in coccolithophores. However, evidence for a direct role for calcification in supply of Ci for photosynthesis is less clear. The environmental factors that regulate calcification are still uncertain but appear to be related as much to the availability of nutrients as CO2. Transport of Ci to the intracellular site of calcification and removal of H+ from the coccolith vesicle appear to present few energetic or kinetic constraints. However, the large sustained transcellular fluxes of Ca2+ required for calcification probably occur via a pathway that does not involve diffusion across the cytoplasm.