A range of studies have compared the level of nutritionally relevant compounds in crops from organic and nonorganic farming systems, but there is very limited information on the effect of farming systems and their key components on the protein composition of plants. We addressed this gap by quantifying the effects of different farming systems and key components of such systems on the protein profiles of potato tubers. Tuber samples were produced in the Nafferton factorial systems study, a group of long-term, replicated factorial field experiments designed to identify and quantify the effect of fertility management methods, crop protection practices and rotational designs used in organic, low input and conventional production systems. Protein profiles were determined by 2-DE and subsequent protein identification by HPLC-ESI-MS/MS. Principal component analysis of 2-DE data showed that only fertility management practices (organic matter vs. mineral fertiliser based) had a significant effect on protein composition. Quantitative differences were detected in 160 of the 1100 tuber proteins separated by 2-DE. Proteins identified by MS are involved in protein synthesis and turnover, carbon and energy metabolism and defence responses, suggesting that organic fertilisation leads to an increased stress response in potato tubers.

Black cohosh [Actaea racemosa L.; syn. Cimicifuga racemosa (L.) Nutt.] is a medicinal plant native to America and the woodlands of eastern North America. The roots and rhizomes of black cohosh, used by Native Americans to ease childbirth and treat menstrual cramps, rheumatism, headaches, coughs, asthma, and snakebites, are currently popular as an herbal remedy in the United States and Europe for the relief of discomfort associated with menopause. To determine chemical variation among populations of this perennial plant, root samples from 33 locations within the natural range of the species, ranging from Massachusetts to South Carolina and west to Missouri and Tennessee, were collected and chemically analyzed by HPLC-PDA using a C-18 reversed phase column (Phenomenex) for separation of the chemical constituents. The constituents were identified by comparison with commercial standards, including actein, methyl-beta-arabinopyranoside, caffeic acid, cimicifugoside, cimicifugoside H1, cimiracemoside A, 26 deoxyactein, ferulic acid, isoferulic acid, kaempferol, formononetin, and others. Chemically, an extract of the root and rhizome is known to contain at least three major natural product groups: cycloartenal-type triterpenes, phenolics, and flavonoids. Chemical constituents, especially formononetin, varied among the populations.

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