These authors contributed equally to this work. SUMMARYDwarfing and semi-dwarfing are important agronomic traits that have great potential for the improvement of wheat yields. Rht12, a dominant gibberellic acid (GA)-responsive dwarfing gene from the gamma-rayinduced wheat mutant Karcagi 522M7K, is located in the long arm of chromosome 5A, which is closely linked with the locus Xwmc410. Rht12 is likely an ideal gene for GA biosynthesis and deactivation research in common wheat. However, information on the Rht12 locus and sequence is lacking. In this study, Rht12 significantly shortened stem cell length and decreased GA biosynthetic components. Using bulked segregant RNA-Seq, wheat 660k single nucleotide polymorphism chip detection, and newly developed simple sequence repeat markers, Rht12 was mapped to a 11.21-Mb region at the terminal end of chromosome 5AL, and was found to be closely linked with the Xw5ac207 SSR marker with a 10.73-Mb fragment deletion in all of the homologous dwarfing plants. Transcriptome analyses of the remaining 483-kb region showed significantly higher expression of the TraesCS5A01G543100 gene encoding the GA metabolic enzyme GA 2-b-dioxygenase in dwarfing plants than in high stalk plants, suggesting that Rht12 reduces plant height by activating TaGA2ox-A14. Taken together, our findings will promote cloning and functional studies of Rht12 in common wheat.

Bruchids (Coleoptera: Bruchidae) can cause serious damage to mungbean and several other leguminous crops and there is a strong association between small seed size and bruchid resistance. In investigating the feasibility of breeding large-seeded cultivars with high levels of bruchid resistance, we studied the relationship between these two traits by QTL analysis. A major locus conferring resistance to Callosobruchus chinensis was identified from a wild mungbean genotype, 'ACC41' (belonging to Vigna radiata var. sublobata), collected in Australia. The proportion of the C. chinensis resistance response that could be attributed to this single QTL varied among four different resistance assays. The highest value reached was 98.5%, suggesting that bruchid resistance in this genotype is likely conditioned by this single locus. The QTL was robust and its detection was not affected by the use of different sources of the insect, different lengths and conditions of seed storage, or different bruchid resistance assay methods. This bruchid resistance QTL was coincident with one of the loci conferring seed mass detected from the three seed sources produced in Australia. However, such a co-location was not detected for the seed source produced in China. Covariance analysis revealed a complex relationship between seed mass and bruchid resistance. Nevertheless, the effect of the bruchid resistance QTL remained highly significant for all four assays after the effect of seed mass was accounted for. These results, together with the relationship between the bruchid resistance QTL identified in this study and a second one detected previously in a wild mungbean genotype from Madagascar, are discussed.

Summary Wheat awn plays a vital role in photosynthesis, grain production, and drought tolerance. However, the systematic identification or cloning of genes controlling wheat awn development is seldom reported. Here, we conducted a genome‐wide association study (GWAS) with 364 wheat accessions and identified 26 loci involved in awn length development, including previously characterized B1, B2, Hd, and several rice homologs. The dominant awn suppressor B1 was fine mapped to a 125‐kb physical interval, and a C2H2 zinc finger protein Awn Length Inhibitor 1 (ALI‐1) was confirmed to be the underlying gene of the B1 locus through the functional complimentary test with native awnless allele. ALI‐1 expresses predominantly in the developing spike of awnless individuals, transcriptionally suppressing downstream genes. ALI‐1 reduces cytokinin content and simultaneously restrains cytokinin signal transduction, leading to a stagnation of cell proliferation and reduction of cell numbers during awn development. Polymorphisms of four single nucleotide polymorphisms (SNPs) located in ALI‐1 promoter region are diagnostic for the B1/b1 genotypes, and these SNPs are associated with awn length (AL), grain length (GL) and thousand‐grain weight (TGW). More importantly, ali‐1 was observed to increase grain length in wheat, which is a valuable attribute of awn on grain weight, aside from photosynthesis. Therefore, ALI‐1 pleiotropically regulates awn and grain development, providing an alternative for grain yield improvement and addressing future climate changes.

The Laoguanhe River is a major tributary of the Danjiang River, which is the source water for the Danjiangkou Reservoir (i.e., the source reservoir for the middle route of the South-to-North Water Diversion Project in China). This study was intended to provide scientific decision support to help manage the water environment in the Laoguanhe River and maintain high water quality levels for the water diversion project. Risk assessment based on water quality simulation was undertaken in this research. The QUAL2Kw model was used to improve the simulations of the water quality in the Laoguanhe River under sparse data conditions. Latin hypercube sampling (LHS) was used to improve flow inputs for QUAL2Kw. The model was used to calculate water quality risks under several scenarios based on a Markov stochastic process to reflect uncertainties. The simulation results indicated that water quality of the downstream sections of the Laoguanhe River could meet the basic requirements for exporting water to the Danjiangkou Reservoir.

Awn plays a vital role in the photosynthesis, grain production and drought tolerance of common wheat; however, works on the systematic identification or cloning of genes controlling wheat awn length (AL) were seldom reported. Here, we conducted the Genome-wide association study (GWAS) in 364 wheat accessions and identified 25 loci involved in the AL, including dominant awn suppressors B1, B2 and four homologs of awn controlling genes in rice and barley. Furthermore, the B1 locus was mapped to a 125-kb physical interval harboring two genes on chromosome 5AL through map-based cloning. As the candidate gene for B1 locus, a C2H2 zinc finger gene Awn Length Inhibitor 1 (ALI-1) expressed predominantly in the developing spike of awnless individuals and suppresses downstream genes transcriptionally. ALI-1 reduces cytokinin content and simultaneously restrains cytokinin signal transduction, which leads to a stagnation of cell proliferation and reduction of cell number in awn. Noteworthily, ali-1 was the first awn controlling locus that observed increasing grain length in wheat, which is a valuable supplemental attribution of awn on grain weight besides photosynthesis. Thus, ALI-1 pleiotropically regulates awn and grain development, and this work provides a strategy to achieve improved grain yield and address future extreme climate.HighlightALI-1, candidate gene of awn suppressing B1 locus, associates with awn length and grain length, providing a reacquaint of the effect of wheat awn on grain production.

Heterosis utilization is very important in hybrid seed production. An AL-type cytoplasmic male sterile (CMS) line has been used in wheat-hybrid seed production, but its sterility mechanism has not been explored. In the present study, we sequenced and verified the candidate CMS gene in the AL-type sterile line (AL18A) and its maintainer line (AL18B). In the late uni-nucleate stage, the tapetum cells of AL18A showed delayed programmed cell death (PCD) and termination of microspore at the bi-nucleate stage. As compared to AL18B, the AL18A line produced 100% aborted pollens. The mitochondrial genomes of AL18A and AL18B were sequenced using the next generation sequencing such as Hiseq and PacBio. It was found that the mitochondrial genome of AL18A had 99% similarity with that of Triticum timopheevii, AL18B was identical to that of Triticum aestivum cv. Chinese Yumai. Based on transmembrane structure prediction, 12 orfs were selected as candidate CMS genes, including a previously suggested orf256. Only the lines harboring orf279 showed sterility in the transgenic Arabidopsis system, indicating that orf279 is the CMS gene in the AL-type wheat CMS lines. These results provide a theoretical basis and data support to further analyze the mechanism of AL-type cytoplasmic male sterility in wheat.

The utilization of livestock waste has attracted increasing attention in recent years. The presence of high levels of heavy metals is a major obstacle to the utilization of biogas as a fertilizer resource. In this study, the heavy metal contents in biogas residue, slurry, and discharged sewage from three representative farms of gooseries, henneries, and dairy farms in the Yangtze River Basin were investigated and assessed. The results demonstrated that heavy metals, including Cd, Mn, As, Cu, Pb, Cr, Zn, etc., could be detected in all biogas residues, with significantly different contents between farm types (p < 0.005). Specifically, biogas residues from the goosery and the dairy farms met “China’s Organic Fertilizer Standards” (COF Standards); however, Cd concentrations in biogas residues from hennery farms exceeded the limits by five times. The concentrations of Cd and Pb in biogas slurries from all of the farms exceeded the limits of the “China Farmland Irrigation Water Quality Standard” (CFIWQ Standard). In particular, the Pb concentrations in biogas slurry from the dairy farms exceeded the limits by 29 times, and the discharged sewage from all three farm types complied with the comprehensive sewage discharge standards in China; however, only that from the goosery farms was suitable for irrigation. Thus, it is recommended to increase the feed selection, biogas engineering, and biological-purification-supporting technology, and to carry out regular sampling inspections of the biogas residue, slurry, and discharged sewage for heavy metals, so that environmental and crop pollution risks can be reduced when they are used as sources of nutrients for eco-friendly agriculture.

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