Global positioning systems (GPSs) and geographical information systems (G ISs) have been widely used to collect and synthesize spatial data from a variety of sources. New advances in satellite imagery and remote sensing now permit scientists to access spatial data at several different resolutions. The Internet facilitates fast and easy data acquisition. In any one study, several different types of data may be collected at differing scales and resolutions, at different spatial locations, and in different dimensions. Many statistical issues are associated with combining such data for modeling and inference. This article gives an overview of these issues and the approaches for integrating such disparate data, drawing on work from geography, ecology, agriculture, geology, and statistics. Emphasis is on state-ofthe-art statistical solutions to this complex and important problem.
After 1 year of follow-up monitoring, mild/moderate VUR does not increase the incidence of UTI, pyelonephritis, or renal scarring after acute pyelonephritis. Moreover, a role for urinary antibiotic prophylaxis in preventing the recurrence of infection and the development of renal scars is not supported by this study.
BackgroundRNA-seq is revolutionizing the way we study transcriptomes. mRNA can be surveyed without prior knowledge of gene transcripts. Alternative splicing of transcript isoforms and the identification of previously unknown exons are being reported. Initial reports of differences in exon usage, and splicing between samples as well as quantitative differences among samples are beginning to surface. Biological variation has been reported to be larger than technical variation. In addition, technical variation has been reported to be in line with expectations due to random sampling. However, strategies for dealing with technical variation will differ depending on the magnitude. The size of technical variance, and the role of sampling are examined in this manuscript.ResultsIn this study three independent Solexa/Illumina experiments containing technical replicates are analyzed. When coverage is low, large disagreements between technical replicates are apparent. Exon detection between technical replicates is highly variable when the coverage is less than 5 reads per nucleotide and estimates of gene expression are more likely to disagree when coverage is low. Although large disagreements in the estimates of expression are observed at all levels of coverage.ConclusionsTechnical variability is too high to ignore. Technical variability results in inconsistent detection of exons at low levels of coverage. Further, the estimate of the relative abundance of a transcript can substantially disagree, even when coverage levels are high. This may be due to the low sampling fraction and if so, it will persist as an issue needing to be addressed in experimental design even as the next wave of technology produces larger numbers of reads. We provide practical recommendations for dealing with the technical variability, without dramatic cost increases.
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