The hydrogen bond interaction between water and imidazole was investigated with the matrix-isolation FTIR spectroscopy coupled to ab initio calculations performed with the RHF and MP2 methods and the parametrized DFT method with the B3LYP hybrid functional. The 6-31G** and 6-31++G** basis sets were used in the calculations. Evaluation of the accuracy of the three methods and the two basis sets was made for noncomplexed imidazole. All three of the methods gave geometries for imidazole in good agreement with the experimental structure. Also, all three levels of theory with both basis sets gave similarly accurate vibrational frequency predictions for monomeric imidazole with a best mean deviation for the DFT/B3LYP/ 6-31++G** method. The assignment of the matrix spectra of the two isomeric H-bond complex species, NsH‚‚‚OH 2 and N‚‚‚HsOH, was performed by comparison with the theoretically predicted IR frequencies and intensities and was further assisted by asymmetrical deuteration experiments. The MP2 and DFT methods employed with the basis set augmented with diffuse functions gave good predictions of the frequency shifts for the vibrational modes directly influenced by the H-bond interaction. For the other vibrational modes, the RHF method performed almost as equally well as the MP2 and DFT methods and we can conclude that this method can provide qualitative and quantitively reliable data on hydrogen-bonded systems.
This work opens a series of studies on the water complexes of
adenines. We use a similar approach as used
in our earlier studies of cytosine−water complexes (i.e., first we
investigate the IR spectral manifestations of
hydrogen−bonding at selected interaction sites of the stable amino
N9H tautomeric form of adenine by studying
simpler model molecules which have only a single or a very few selected
hydrogen-bond interaction sites
typical for adenine). The present study concerns the first two of
such model molecules, benzimidazole and
1-CH3−benzimidazole. IR vibrational spectra of
matrix-isolated benzimidazole, 1-CH3−benzimidazole,
and
their complexes with water are analyzed and assigned by comparing the
experimental spectra with the IR
frequencies and intensities computed with the use of ab initio and
density functional theory (DFT) methods.
When the DFT/B3LYP/6-31++G** monomer frequencies are scaled
with three different scaling factors, the
mean differences between the experimental and calculated frequencies
are only 10 and 8 cm-1 for
benzimidazole
and 1-CH3−benzimidazole, respectively. The
calculated, MP2/6-31++G**//RHF/6-31++G** (MP2
denotes
the second-order Møller−Plesset Perturbation Theory, RHF denotes the
restricted Hartree-Fock method, and
notation MP2//RHF denotes that the molecular geometries were optimized
at the RHF level and then used to
calculate total energies using the MP2 method), H-bond interaction
energies, with the basis set superposition
error accounted for, are −22.6, −21.2, and −22.0 kJ/mol for the
benzimidazole N1−H···OH2 and
N3···H−OH complexes and the 1-CH3−benzimidazole
N3···H−OH complex, respectively. The
DFT/B3LYP/6-31++G** method yields similar H-bond interaction energies. The
frequency shifts of the vibrational modes
directly involved in the H-bond interactions are better predicted by
the DFT method than by the RHF method.
For other vibrational modes not directly involved in the H-bonds,
the two methods provide a similar level of
accuracy in predicting the shifts of the fundamental modes caused by
H-bonding interactions. In this work
we also establish correlations between experimental and theoretical
characteristics of the N−H···OH2
H-bonding
in water complexes of benzimidazole and
1-CH3−benzimidazole, and these correlations will be used
in future
elucidation of FT−IR spectra of water complexes of
adenine.
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