To construct an East Asia mitochondrial DNA (mtDNA) phylogeny, we sequenced the complete mitochondrial genomes of 672 Japanese individuals (http://www.giib.or.jp/mtsnp/index_e.html). This allowed us to perform a phylogenetic analysis with a pool of 942 Asiatic sequences. New clades and subclades emerged from the Japanese data. On the basis of this unequivocal phylogeny, we classified 4713 Asian partial mitochondrial sequences, with <10% ambiguity. Applying population and phylogeographic methods, we used these sequences to shed light on the controversial issue of the peopling of Japan. Population-based comparisons confirmed that present-day Japanese have their closest genetic affinity to northern Asian populations, especially to Koreans, which finding is congruent with the proposed Continental gene flow to Japan after the Yayoi period. This phylogeographic approach unraveled a high degree of differentiation in Paleolithic Japanese. Ancient southern and northern migrations were detected based on the existence of basic M and N lineages in Ryukyuans and Ainu. Direct connections with Tibet, parallel to those found for the Y-chromosome, were also apparent. Furthermore, the highest diversity found in Japan for some derived clades suggests that Japan could be included in an area of migratory expansion to Continental Asia. All the theories that have been proposed up to now to explain the peopling of Japan seem insufficient to accommodate fully this complex picture

Traditional classification algorithms assume that training and test data come from similar distributions. This assumption is violated in adversarial settings, where malicious actors modify instances to evade detection. A number of custom methods have been developed for both adversarial evasion attacks and robust learning. We propose the first systematic and general-purpose retraining framework which can: a) boost robustness of an arbitrary learning algorithm, in the face of b) a broader class of adversarial models than any prior methods. We show that, under natural conditions, the retraining framework minimizes an upper bound on optimal adversarial risk, and show how to extend this result to account for approximations of evasion attacks. Extensive experimental evaluation demonstrates that our retraining methods are nearly indistinguishable from state-of-the-art algorithms for optimizing adversarial risk, but are more general and far more scalable. The experiments also confirm that without retraining, our adversarial framework dramatically reduces the effectiveness of learning. In contrast, retraining significantly boosts robustness to evasion attacks without significantly compromising overall accuracy.

Phylogeographical patterns of intraspecific variation can provide insights into the population-level processes responsible for speciation and yield information useful for conservation purposes. In the present study, three hundred and forty-five base pairs of the mitochondrial DNA control region were sequenced to analyse the genetic diversity, population structure and history, and phylogeography of finless porpoises (Neophocaena phocaenoides) in Chinese and Japanese waters of the North Pacific. Nucleotide and haplotype diversities were 0.44% and 0.79 ± 0.01 for Chinese and Japanese waters, respectively, but varied significantly among populations. Analysis of molecular variance showed a high level of genetic structure between populations (FST = 0.61, P < 0.001; FST = 0.52, P < 0.001). Eleven of 18 haplotypes were restricted to a single population, common haplotypes were found in two to four populations, but no haplotype was found throughout Sino-Japanese waters, suggesting multiple colonization events followed by limited gene flow. The inferred age of demographic expansion was from the end stage of the last ice age to the Holocene. No obvious phylogeographical pattern was revealed, including between saline and fresh water populations. A low level of genetic diversity for each population and high among-population differentiation in haplotype frequency were revealed, which suggest a role for random genetic drift, recent demographic bottlenecks, and reduced or limited gene flow in these populations. Some conservation considerations, with special reference to the unique Yangtze population, are discussed.

No abstract

The great progress that optoelectronic technologies have achieved in van der Waals crystals promises the development of next-generation two-dimensional (2D) integrated optoelectronic systems (IOSs). Here, relying on the anomalous avoidance of pump-light absorption, the harvest of extremely strong Raman scattering, and the achievement of polarization inheritance by the designed optical geometry, we realized laser wavelength tuning with ultrahigh precision (0.01 nm/25 K) in layered MoS and WS by adjusting the temperature. Our results offer a potential approach for 2D laser tuning, while also building a substantial theoretical foundation, which might be of use in developing future wavelength-division-multiplexing technology in 2D IOSs.