We performed density functional theory (DFT) calculations using the WB97Xd functional with a dispersion correction term and the 6-31G(d,p) basis set to study the contributions of π–π stacking and hydrogen-bonding interactions to the aggregation of asphaltene model compounds containing a 2,2′-bipyridine moiety covalently bonded to one (monosubstituted) and two (disubstituted) aromatic hydrocarbon moieties (phenyl, naphthyl, anthracyl, phenanthryl, and pyrenyl) through ethylene tethers. In these compounds, the N atoms of the 2,2′-bipyridine moiety provide lone pairs for hydrogen bonding to water molecules present in solution. The aggregation strength of the homodimers of these model compounds is evaluated in terms of the aggregation energies, enthalpies, and ΔG 298, as well as the π–π interaction distances. Geometry optimization and thermochemistry analysis results show that the homodimers of both mono- and disubstituted compounds are stable and have a negative ΔG 298 of aggregation because of π–π stacking interactions. Two water bridges containing one, two, or three water molecules per bridge span between two monomers and provide additional stabilization of the homodimers because of hydrogen bonding. The stabilization of the monosubstituted homodimers is the largest with two water molecules per bridge, whereas the stabilization of the disubstituted homodimers is the largest with three water molecules per bridge. The calculated 1H nuclear magnetic resonance chemical shifts for the monomers and dimers of the three model compounds of this series synthesized to date are in excellent agreement with experimental results for dilute and concentrated solutions in chloroform, respectively (Water enhances the aggregation of model asphaltenes in solution via hydrogen bonding Tan X. Fenniri H. Gray M. R. Tan X. Fenniri H. Gray M. R. Energy Fuels2009233687). The ΔH and ΔG 298 results show that hydrogen bonding is as important as π–π interactions for asphaltene aggregation.

We applied a multiscale modeling approach that involves the statistical-mechanical three-dimensional reference interaction site model with the Kovalenko-Hirata closure approximation (3D-RISM-KH molecular theory of solvation) as well as density functional theory (DFT) of electronic structure to study the role of water in aggregation of the asphaltene model compound 4,4'-bis(2-pyren-1-yl-ethyl)-2,2'-bipyridine (PBP) [X. Tan, H. Fenniri and M. R. Gray, Energy Fuels, 2008, 22, 715]. The solvation free energy and potential of mean force predicted by 3D-RISM-KH reveal favorable pathways for disaggregation of PBP dimers in pure versus water-saturated chloroform solvent. The water density distribution functions elucidate hydrogen bonding preferences and water bridge formation between PBP monomers. The ΔG(298) values of -5 to -7 kcal mol(-1) for transfer of water molecules in chloroform to a state interacting with PBP molecules are in agreement with experimental results. Geometry optimization and thermochemistry analysis of PBP dimers with and without water bridges using WB97Xd/6-31G(d,p) predict that both PBP dimerization and dimer stabilization by water bridges are spontaneous (ΔG(298) < 0). The (1)H NMR chemical shifts of PBP monomers and dimers predicted using the gauge-independent atomic orbital method and polarizable continuum model for solvation in chloroform are in an excellent agreement with the experimental results for dilute and concentrated PBP solutions in chloroform, respectively [X. Tan, H. Fenniri and M. R. Gray, Energy Fuels, 2009, 23, 3687]. The DFT calculations of PBP dimers with explicit water show that bridges containing 1-3 water molecules lead to stabilization of PBP dimers. Additional water molecules form hydrogen bonds with these bridges and de-shield the PBP protons, negating the effect of water on the (1)H(C3) NMR chemical shift of PBP, in agreement with experiment. The ΔG(298) results show that hydrogen bonding to water and water-promoted polynuclear assembly bridging is as important as π-π interactions for asphaltene aggregation.

Density functional theory (DFT), Møller-Plesset second-order perturbation theory (MP2), and semiempirical methods are employed for the geometry optimization and thermochemistry analysis of π-π stacked di-, tri-, tetra-, and pentamer aggregates of the fused polycyclic aromatic hydrocarbons (PAHs) naphthalene, anthracene, phenanthrene, tetracene, pyrene, and coronene as well as benzene. These aggregates (stabilized by dispersion interactions) are highly relevant to the intermolecular aggregation of asphaltenes, major components of heavy petroleum. The strength of π-π stacking interaction is evaluated with respect to the π-stacking distance and thermochemistry results, such as aggregation enthalpies, entropies, and Gibbs free energies (ΔG(298)). For both π-stacking interplanar distances and thermochemistry, the ωB97X-D functional with an augmented damped R(-6) dispersion correction term and MP2 are in the closest agreement with the highly accurate spin-component scaled MP2 (SCS-MP2) method that we selected as a reference. The ΔG(298) values indicate that the aggregation of coronene is spontaneous at 298 K and the formation of pyrene dimers occurs spontaneously at temperature lower than 250 K. Aggregates of smaller PAHs would be stable at even lower temperature. These findings are supported by X-ray crystallographic determination results showing that among the PAHs studied only coronene forms continuous stacked aggregates in single crystals, pyrene forms dimers, and smaller PAHs do not form π-π stacked aggregates. Thermochemistry analysis results show that PAHs containing more than four fused benzene rings would spontaneously form aggregates at 298 K. Also, round-shaped PAHs, such as phenanthrene and pyrene, form more stable aggregates than linear PAHs, such as anthracene and tetracene, due to decreased entropic penalty. These results are intended to help guide the synthesis of model asphaltene compounds for spectroscopic studies so as to help understand the aggregation behavior of heavy petroleum.

Palavras-chave: metabólitos secundários, plantas tóxicas, ecologia química, monilophyta, licophytaABSTRACT -(Cyanogenesis in sporophytes of pteridophytes evidenced by the picric acid test). Cyanogenic glycosides are defense substances found in some plants that are able to produce cyanhydric acid on hydrolysis. The present work aimed to study the occurrence of cyanogenesis in pteridophytes of rocky areas of Pedra de Itacoatiara, State Park of Serra da Tiririca, Rio de Janeiro State. Nineteen species, distributed in 13 genera and nine families have been analyzed monthly, during one year. In each species, the analysis was carried out on fertile leaves, sterile ones, young leaves (croziers) and stems. Cyanogenesis was evidenced using filter paper embedded with picric acid. Among studied species, 14 were analysed here for the first time, and 14 gave a positive picric test. Our results showed variation along time in the production of cyanhydric acid in the vegetal species and parts. The species, Microgramma vacciniifolia (Langsd. & Fisch.) Copel. (Polypodiaceae) and Pteridium aquilinum (L.) Kuhn var. arachnoideum (Kaulf.) Brade (Dennstaedtiaceae) were cyanogenic all along the studied period.

Nonconventional oil is usually heavy and extra heavy crude or light oil that is relatively unstable. This oil contains varying proportions of larger, more aromatic constituents rather than molecules that can be distilled directly into fuels and petrochemicals. We perform density functional theory (ωB97X-D/6-31G(d,p)) calculations to study the contributions of steric effects and dispersion interactions in a series of dimers and trimers of model hydrocarbons containing fused aromatic and cyclohexyl (referred to in the petroleum literature as naphthenic) rings. The aggregation behavior of these molecules is analyzed in terms of the optimized geometry, atomic charges, interaction enthalpy (ΔH), and Gibbs free energy (ΔG 298 ). The ΔH and ΔG 298 values show that all the dimerization and trimerization processes are exothermic, and only a few are spontaneous at 298 K. The naphthenic hydrogen atoms have a key role in the orientation of the monomers in dimer and trimer aggregates. The interaction among naphthenic hydrogen atoms belonging to adjacent monomers causes steric repulsion. The interaction of naphthenic hydrogen atoms with the π-electronic clouds of aromatic rings in adjacent molecules causes attraction. In both cases, the naphthenic hydrogen atoms cause deviation of the monomer from the initial parallel displaced configuration in dimers and trimers. These results reflect the importance of naphthenic rings and their steric interactions in determining the relationship between structures of nonconventional petroleum constituents and their tendency to aggregate and cause fouling.

Lithium manganese oxide, LiMn 2 O 4 , was synthesized in two temperature stages, where the first consisted by an ecofriendly solution combustion method at 300 °C. Finally, the as-burned powders were thermal treated at 500 and 700 °C. The structural and morphological changes were evaluated by the Rietveld method and density functional theory (DFT) calculations. The Rietveld refinement indicates obtaining the spinel cubic phase LiMn 2 O 4 and a small amount of Mn 2 O 3 . The analyses by scanning electron microscopy (SEM) and transmission electron microscopy (TEM) show a porous microstructure composed of nano-sized crystallites for the sample treated at 500 °C. In cyclic voltammetry, it was possible to observe that the reduction-oxidation reaction is reversible due to the shape of voltammograms and the anodic and cathodic peaks of Mn ions. The theoretical calculations considered the experimental crystallographic parameters. The unit cell volume change was evaluated according to distinct amounts of lithium ions in the structure. The removal of the Li + cations from the oxides promotes a volume contraction. Therefore, it was possible to evaluate the participation of the Mn 3+ ions in the frontier region between the valence and conduction bands. The density of states (DOS) calculation shows a predominant contribution of the O 2p and Mn 3d orbitals in the frontier orbitals.

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