Quantum sensing with shallow nitrogen-vacancy (NV) centers in diamond offer promise for chemical analysis. Preserving favorable NV spin and charge properties while enabling molecular surface functionalization remains a critical challenge.
The ATP hydrolysis transition state of motor proteins is a weakly populated protein state that can be stabilized and investigated by replacing ATP with chemical mimics. We present atomic-level structural and dynamic insights on a state created by ADP aluminum fluoride binding to the bacterial DnaB helicase from Helicobacter pylori. We determined the positioning of the metal ion cofactor within the active site using electron paramagnetic resonance, and identified the protein protons coordinating to the phosphate groups of ADP and DNA using proton-detected 31P,1H solid-state nuclear magnetic resonance spectroscopy at fast magic-angle spinning > 100 kHz, as well as temperature-dependent proton chemical-shift values to prove their engagements in hydrogen bonds. 19F and 27Al MAS NMR spectra reveal a highly mobile, fast-rotating aluminum fluoride unit pointing to the capture of a late ATP hydrolysis transition state in which the phosphoryl unit is already detached from the arginine and lysine fingers.
The structural characterization of supported molecular catalysts is challenging due to the low density of active sites and the presence of several organic/organometallic surface groups resulting from the often complex surface chemistry associated with support functionalization. Here, we provide a complete atomic-scale description of all surface sites in an N-heterocyclic carbene based on iridium and supported on silica, at all stages of its synthesis. By combining a suitable isotope labeling strategy with the implementation of multinuclear dipolar recoupling DNP-enhanced NMR experiments, the 3D structure of the Ir-NHC sites, as well as that of the synthesis intermediates were determined. As a significant fraction of parent surface fragments does not react during the multistep synthesis, site-selective experiments were implemented to specifically probe proximities between the organometallic groups and the solid support. The NMR-derived structure of the iridium sites points to a well-defined conformation. By interpreting EXAFS spectroscopy and chemical analysis data augmented by computational studies, the presence of two coordination geometries is demonstrated: Ir-NHC fragments coordinated by a 1,5-cyclooctadiene and one Cl ligand, as well as, more surprisingly, a fragment coordinated by two NHC and two Cl ligands. This study demonstrates a unique methodology to disclose individual surface structures in complex, multisite environments, a long-standing challenge in the field of heterogeneous/supported catalysts, while revealing new, unexpected structural features of metallo-NHC-supported substrates. It also highlights the potentially large diversity of surface sites present in functional materials prepared by surface chemistry, an essential knowledge to design materials with improved performances.
Temperature-dependent NMR experiments are often complicated by rather long magnetic-field equilibration times, for example, occurring upon a change of sample temperature. We demonstrate that the fast temporal stabilization of a magnetic field can be achieved by actively stabilizing the temperature of the magnet bore, which allows quantification of the weak temperature dependence of a proton chemical shift, which can be diagnostic for the presence of hydrogen bonds. Hydrogen bonding plays a central role in molecular recognition events from both fields, chemistry and biology. Their direct detection by standard structure-determination techniques, such as X-ray crystallography or cryo-electron microscopy, remains challenging due to the difficulties of approaching the required resolution, on the order of 1 Å. We, herein, explore a spectroscopic approach using solid-state NMR to identify protons engaged in hydrogen bonds and explore the measurement of proton chemical-shift temperature coefficients. Using the examples of a phosphorylated amino acid and the protein ubiquitin, we show that fast magic-angle spinning (MAS) experiments at 100 kHz yield sufficient resolution in proton-detected spectra to quantify the rather small chemical-shift changes upon temperature variations.
Despite being widely used in numerous catalytic applications, our understanding of reactive surface sites of highsurface-area γ-Al 2 O 3 remains limited to date. Recent contributions have pointed toward the potential role of highly reactive edge sites contained in the high-field signal (−0.5 to 0 ppm) of the 1 H NMR spectrum of γ-Al 2 O 3 materials. This work combines the development of well-defined, needle-shaped γ-Al 2 O 3 nanocrystals having a high relative fraction of edge sites with the use of state-of-the-art solid-state NMR to significantly deepen our understanding of this specific signal. We are able to resolve two hydroxyl sites with distinct isotropic chemical shifts of −0.2 and −0.4 ppm and different positions within the dipole−dipole network from 1 H− 1 H single-quantum double-quantum NMR. Moreover, the use of recoupling-time-encoded arbitrary-indirect-dwell dipolar heteronuclear multiple quantum coherence allows us to partially revise previous assignments for surface-aluminum sites in the proximity of these hydroxyl sites. Although previous work has ascribed the high-field signal to be correlated with a single four-coordinate Al-site with a substantial quadrupolar broadening of >10 MHz, we can identify the presence of two four-coordinate Al-sites with similar isotropic chemical shifts but different quadrupolar coupling constants of approximately 7 and >10 MHz, respectively. Recoupling-time-encoded data are thus able to differentiate sites that would otherwise only be achievable with access to multiple fields or usage of highly advanced NMR techniques.
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