This work provides an overview of the use of small unmanned aircraft systems for freshwater fisheries survey and fish identification. As an example, a series of river reaches in Mongolia was surveyed for identification and sizing of the endangered Taimen Hucho taimen, the world's largest salmonid. Using polarized video imagery, Taimen were positively identified in depths of over 2 m. River reaches were chosen for survey to include likely Taimen holding grounds as well as areas that were unlikely Taimen habitat. Large areas of river reaches were quickly surveyed with video imagery stored for analysis. Using land‐based targets for sizing and flying autonomous search patterns, we found that Taimen were easily identifiable based on their swimming patterns and could be remotely sized; furthermore, the fish did not appear to be disturbed by the presence of overhead aircraft. Lessons learned from the experiments and recommendations for future advances are provided. The use of small unmanned aircraft systems for fisheries is shown to be a novel and inexpensive alternative to traditional fisheries survey methods.
Population genetic analyses can evaluate how evolutionary processes shape diversity and inform conservation and management of imperiled species. Taimen (Hucho taimen), the world’s largest freshwater salmonid, is threatened, endangered, or extirpated across much of its range due to anthropogenic activity including overfishing and habitat degradation. We generated genetic data using high throughput sequencing of reduced representation libraries for taimen from multiple drainages in Mongolia and Russia. Nucleotide diversity estimates were within the range documented in other salmonids, suggesting moderate diversity despite widespread population declines. Similar to other recent studies, our analyses revealed pronounced differentiation among the Arctic (Selenge) and Pacific (Amur and Tugur) drainages, suggesting historical isolation among these systems. However, we found evidence for finer-scale structure within the Pacific drainages, including unexpected differentiation between tributaries and the mainstem of the Tugur River. Differentiation across the Amur and Tugur basins together with coalescent-based demographic modeling suggests the ancestors of Tugur tributary taimen likely diverged in the eastern Amur basin, prior to eventual colonization of the Tugur basin. Our results suggest the potential for differentiation of taimen at different geographic scales, and suggest more thorough geographic and genomic sampling may be needed to inform conservation and management of this iconic salmonid.
Analyses of the factors shaping spatial genetic structure in widespread plant species are important for understanding evolutionary history and local adaptation and have applied significance for guiding conservation and restoration decisions. Thurber needlegrass (Achnatherum thurberianum) is a widespread, locally abundant grass that inhabits heterogeneous arid environments of western North America and is of restoration significance. It is a common component of shrubland steppe communities in the Great Basin Desert, where drought, fire, and invasive grasses have degraded natural communities. Using a reduced representation sequencing approach, we generated SNP data at 5,677 loci across 246 individuals from 17 A. thurberianum populations spanning five previously delineated seed zones from the western Great Basin. Analyses revealed pronounced population genetic structure, with individuals forming consistent geographical clusters across a variety of population genetic analyses and spatial scales. Low levels of genetic diversity within populations, as well as high population estimates of linkage disequilibrium and inbreeding, were consistent with self-fertilization as a contributor to population differentiation. Moreover, variance partitioning and partial RDA indicated local adaptation to the environment as an additional factor influencing the spatial distribution of genetic variation. The environmental variables driving these results were similar to those implicated in recent genecological work which inferred local adaptation in order to delineate seed zones. However, our analyses also reveal a complex evolutionary history of A. thurberanium in the Great Basin, where previously delineated seed zones contain distantly related populations. Overall, our results indicate that numerous factors shape genetic variation in A. thurberianum and that evolutionary history, along with differentiation across distinct geographic and environmental scales, should be considered for conservation and restoration plans.
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