Populations of broadcast spawning marine organisms often have large sizes and are exposed to reduced genetic drift. Under such scenarios, strong selection associated with spatial environmental heterogeneity is expected to drive localized adaptive divergence, even in the face of connectivity. We tested this hypothesis using a seascape genomics approach in the commercially important greenlip abalone (Haliotis laevigata). We assessed how its population structure has been influenced by environmental heterogeneity along a zonal coastal boundary in southern Australia linked by strong oceanographic connectivity. Our data sets include 9,109 filtered SNPs for 371 abalones from 13 localities and environmental mapping across ~800 km. Genotype-environment association analyses and outlier tests defined 8,786 putatively neutral and 323 candidate adaptive loci. From a neutral perspective, the species is better represented by a metapopulation with very low differentiation (global F = 0.0081) and weak isolation by distance following a stepping-stone model. For the candidate adaptive loci, however, model-based and model-free approaches indicated five divergent population clusters. After controlling for spatial distance, the distribution of putatively adaptive variation was strongly correlated to selection linked to minimum sea surface temperature and oxygen concentration. Around 80 candidates were annotated to genes with functions related to high temperature and/or low oxygen tolerance, including genes that influence the resilience of abalone species found in other biogeographic regions. Our study includes a documented example about the uptake of genomic information in fisheries management and supports the hypothesis of adaptive divergence due to coastal environmental heterogeneity in a connected metapopulation of a broadcast spawner.
A series of stock enhancement experiments were carried out on Haliotis laevigata populations. Methodologies included a large-scale BACI (before, after, control, impact) experiment (42 sites); a carrying capacity experiment, which involved a high-density release at two sites; and a detailed survey of abalone populations and ecological parameters. Increased densities were detected for most age classes, although fishing mortality began obscuring the effect by age 5+. Age-4+ animals showed the clearest result, with no difference between enhanced and control sites at 6, 12, and 18 months post-release, and then a 300% increase at enhanced sites at 30 months post-release. Overall, a single release of age-1+ animals in May 2006 had doubled the total density by November 2008. In the carrying capacity experiment, densities initially increased rapidly (by up to 800%) but had stabilized at a 400% increase after 2.5 years, at around 8 per m 2 . This was the predicted carrying capacity, with the enhanced cohort representing 50% of the population. A PERMANOVA (permutational multivariate analysis of variance) analysis of ecological similarity detected no effect of enhancement, although changes in algal percent of coverage were detected at both control and enhanced sites. Overall, this study suggests that as long as release densities are controlled within natural limits, successful stock enhancement can be attained for this species with minimal ecological impacts.
A cohort of Haliotis laevigata, spawned from wild broodstock, was monitored from settlement at a hatchery until age 8. Animals were released into the wild at 31 mm (± 4 SD), targeting an enhancement size-class of 135-145-mm shell length. Release densities were tailored to match wild-stock densities using a size-dependent mortality model. A total of 7,500 animals were released into 24 sites, and each site was precisely mapped to control release densities. Environmental and husbandry factors were also quantified. Initial survival rates (six months post-release) differed significantly among sites (range: 11-67%) but not beyond this time period. Legal minimum length (140 mm) was achieved, on average, at 5 years of age or 3.5 years post-release, and the cohort entered the fishery over 3 years (age 5-8). Cumulative survival at age 5 varied between 20% at the better sites and 6% at the worst sites, with an average of 13%. Water depth was significantly positively correlated with growth (r = 0.47; p < 0.05), but no other ecological variables influenced growth or survival. Husbandry factors were implicated in sites with poor survival, but this was not confirmed statistically. The cohort successfully entered the fishery and was harvested at an overall fishing mortality (F) of 0.27, but site differences in F were significant and highly correlated with growth.
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