We study Vafa's geometric transition from a brane setup in M-theory. In this transition D5 branes wrapped on P 1 cycles of a resolved conifold disappear and are replaced by fluxes on a deformed conifold. In the limit of small sized P 1 , we describe this mechanism as a transition from curved M5 branes to plane M5 branes which replaces SU(N) MQCD by U(1) theories on the bulk. This agrees with the results expected from the geometric transition. We also discuss the reduction to ten dimensions and a brane creation mechanism in the presence of fluxes.

We extend the large N duality of four dimensional N = 1 supersymmetric Yang-Mills theory with additional chiral fields and arbitrary superpotential recently proposed by Cachazo, Intriligator and Vafa to the case of SO/Sp gauge groups. By orientifolding the geometric transition, we investigate a large N duality between N = 1, SO/Sp supersymmetric theories with arbitrary superpotential and an Abelian N = 2 theory with supersymmetry broken to N = 1 by electric and magnetic Fayet-Iliopoulos terms.

We study Vafa's geometric transition and Klebanov -Strassler solution from various points of view in M-theory. In terms of brane configurations, we show the detailed equivalences between the two models. In some limits, both models have an alternative realization as fourfolds in M-theory with appropriate G-fluxes turned on. We discuss some aspects of the fourfolds including how to see the transition and a possible extension to the non-supersymmetric case.

We propose a general method to study open/closed string dualities from transitions in M theory which is valid for a large class of geometrical configurations. By T-duality we can transform geometrically engineered configurations into N = 1 brane configurations and study the transitions of the corresponding branes by lifting the configurations to Mtheory. We describe the transformed degenerated M5 branes and extract the field theory information on gluino condensation by factorization of the Seiberg-Witten curve. We also include massive flavors and orientifolds and discuss Seiberg duality which appears in this case as a birational flop. After the transition, the Seiberg duality becomes an abelian electric-magnetic duality.

We study large N dualities for a general class of N = 1 theories realized on type IIB D5 branes wrapping 2-cycles of local Calabi-Yau threefolds or as effective field theories on D4 branes in type IIA brane configurations. We completely solve the issue of the classical moduli space for N = 2, n i=1 U (N i ) theories deformed by a general superpotential for the adjoint and bifundamental fields. The N = 1 geometries in type IIB and its T-dual brane configurations are presented and they agree with the field theory analysis. We investigate the geometric transitions in the ten dimensional theories as well as in M-theory. Strong coupling effects in field theory are analyzed in the deformed geometry with fluxes. Gluino condensations are identified the normalizable deformation parameters while the vacuum expectation values of the bifundamental fields are with the non-normalizable ones. By lifting to M theory, we get a transition from finite coverings of non-hyperelliptic curves to non-hyperelliptic curves. We also discuss orientifold theories, Seiberg dualities and mirror symmetries. e-print archive: http://xxx.lanl.gov/hep-th/0112040