A unique gene, RBP-MS, spanning over 230 kb in the human chromosome 8pll-12 near the Werner syndrome gene locus is described. The single-copy RBP-MS gene is alternatively spliced, resulting in a family of at least 12 transcripts (average length of 1.5 kb). Nine different types of cDNAs that encode an RNA-binding motif at the N terminus and helix-rich sequences at the C terminus have been identified thus far. Among the 16 exons identified, four 5'-proximal exons contained sequences homologous to the RNAbinding domain of Drosophila couch potato gene. Northern blot analysis showed that the RBP-MS gene was expressed strongly in the heart, prostate, intestine, and ovary, and poorly in the skeletal muscle, spleen, thymus, brain, and peripheral leukocytes. The possible role of this gene in RNA metabolism is discussed.Several genes of medical importance map to the short arm of chromosome 8, including the tumor suppressor genes implicated in the pathogenesis of colorectal carcinoma and prostate cancer (1, 2) and the gene responsible for Werner syndrome (WS), a rare autosomal recessive disorder characterized by the premature aging (3-7). Recently, Yu and coworkers cloned a DNA helicase gene as a candidate for WS gene from the 8pl 1-12 region (8). As part of similar efforts to identify the WS gene as well as other disease-related genes, we established a 1.3-megabase physical map spanning the WS region and localized known and novel genes in this interval. These efforts facilitated the physical mapping of the sequence-tagged site and known genes such as those encoding for glutathione S-reductase (GSR), transcription factor IIE ,3 subunit (TFIIEf3), and protein phosphatase 2A f3 subunit (PP2A 4) on chromosome 8pll-12. In addition, analysis by a dual-color fluorescence in situ hybridization analysis enabled us to estimate the precise distances between the genomic markers and genes (9).The WS region was cloned in P1. Exon trapping was used to identify novel gene(s) occurring in this important region. Candidate exons were used in searches of the public data bases and also used to screen cDNA libraries. One novel gene obtained through the processes was of particular interest, as this gene is in close proximity to the closest genetic markers to the WS gene, D8S339 and D8S1055 (10,11). Further interest in this gene was strengthened by its unique features and complex genomic structure.Sequence analysis of cloned cDNAs and genomic DNA showed that this gene, referred to as RBP-MS (RNA-binding protein gene with multiple splicing), produces multiple transcripts by differential splicing and codes for a family of RNA-binding proteins. The RNA-binding motif region shared in all the predicted proteins is highly homologous to that of Drosophila couch potato proteins implicated in the regulation of peripheral nervous system development in the embryo (12). Initial studies in gene cloning and Northern analysis revealed that the transcripts were rather short (1.5 kb) despite the finding that the gene was as long as 230 kb.This paper desc...