A highly resolved, 3-d model of hydrodynamics and Alexandrium fundyense in an estuarine embayment has been developed to investigate the physical and biological controls on a recurrent harmful algal bloom. Nauset estuary on Cape Cod (MA, USA) consists of three salt ponds connected to the ocean through a shallow marsh and network of tidal channels. The model is evaluated using quantitative skill metrics against observations of physical and biological conditions during three spring blooms. The A. fundyense model is based on prior model applications for the nearby Gulf of Maine, but notable modifications were made to be consistent with the Nauset observations. The dominant factors controlling the A. fundyense bloom in Nauset were the water temperature, which regulates organism growth rates, and the efficient retention of cells due to bathymetric constraints, stratification, and cell behavior (diel vertical migration). Spring-neap variability in exchange altered residence times, but for cell retention to be substantially longer than the cell doubling time required both active vertical migration and stratification that inhibits mixing of cells into the surface layer by wind and tidal currents. Unlike in the Gulf of Maine, the model results were relatively insensitive to cyst distributions or germination rates. Instead, in Nauset, high apparent rates of vegetative cell division by retained populations dictated bloom development. Cyst germination occurred earlier in the year than in the Gulf of Maine, suggesting that Nauset cysts have different controls on germination timing. The model results were relatively insensitive to nutrient concentrations, due to eutrophic conditions in the highly impacted estuary or due to limitations in the spatial and temporal resolution of nutrient sampling. Cell loss rates were inferred to be extremely low during the growth phase of the bloom, but increased rapidly during the final phase due to processes that remain uncertain. The validated model allows a quantitative assessment of the factors that contribute to the development of a recurrent harmful algal bloom and provides a framework for assessing similarly impacted coastal systems.

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Nutrient enrichment bioassays, in conjunction with sampling and analysis of surface water chemistry, were conducted in freshwater lakes (kettle ponds) of Cape Cod National Seashore (Massachusetts, USA) to ascertain the importance of nitrogen (N) and phosphorus (P) in regulating the growth of periphyton. Arrays of nutrient diffusing substrata (NDS) were suspended 0.5 m below the water surface in a total of 12 ponds in July and August 2005. Algal biomass developing on each NDS after $3 weeks of exposure in each month was assessed by quantifying chlorophyll a + phaeophyton pigments. In both July and August, strong responses to N+P and N enrichments were observed in the majority of ponds, while P had no stimulatory effect. These responses correspond well with low atomic ratios (1-18) of dissolved inorganic nitrogen (DIN) to total phosphorus (TP) in ambient surface waters. The results suggest that conditions in the kettle ponds develop whereby nitrogen is the primary limiting nutrient to periphyton growth. While this may be a seasonal phenomenon, it has implications for nutrient management in individual ponds and within the larger watershed.

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