Genetic diversity in peanut (Arachishypogaea L.) is narrow due to its evolution and domestication processes. Amphidiploids and autotetraploids (newly synthesized tetraploids) were created to broaden its genetic base. Molecular analysis has shown that the newly synthesized tetraploids had broader genetic base; and were genetically divergent when compared to cultivated peanut. Nutritional composition relative to oil, fatty acid composition, O/L ratio, protein, iodine value and presence of plant proteinase inhibitors such as trypsin and chymotrypsin inhibitors were studied in the synthesized tetraploids. Some of the newly synthesized tetraploids had higher amounts of proteinase inhibitors. Evaluation of newly synthesized tetraploids revealed several lines resistant to late leaf spot (LLS) and peanut bud necrosis disease (PBND).

Ploidy difference between wild Arachis species and cultivated genotypes hinder transfer of useful alleles for agronomically important traits. To overcome this genetic barrier, two synthetic tetraploids, viz., ISATGR 1212 (A. duranensis ICG 8123 × A. ipaensis ICG 8206) and ISATGR 265-5A (A. kempff-mercadoi ICG 8164 × A. hoehnei ICG 8190), were used to generate two advanced backcross (AB) populations. The AB-populations, namely, AB-pop1 (ICGV 91114 × ISATGR 1212) and AB-pop2, (ICGV 87846 × ISATGR 265-5A) were genotyped with DArT and SSR markers. Genetic maps were constructed for AB-pop1 and AB-pop2 populations with 258 loci (1415.7 cM map length and map density of 5.5 cM/loci) and 1043 loci (1500.8 cM map length with map density of 1.4 cM/loci), respectively. Genetic analysis identified large number of wild segments in the population and provided a good source of diversity in these populations. Phenotyping of these two populations identified several introgression lines with good agronomic, oil quality, and disease resistance traits. Quantitative trait locus (QTL) analysis showed that the wild genomic segments contributed favourable alleles for foliar disease resistance while cultivated genomic segments mostly contributed favourable alleles for oil quality and yield component traits. These populations, after achieving higher stability, will be useful resource for genetic mapping and QTL discovery for wild species segments in addition to using population progenies in breeding program for diversifying the gene pool of cultivated groundnut.

Tea mosquito bug (TMB) is a serious pest of cocoa whose prevalence is high, mostly during summer and post monsoon season. Three species of tea mosquito bug have been reported on cocoa: Helopeltis antonii Signoret, H. theivora Waterhouse, and H. bradyi Waterhouse. H. theivora is the most prevalent one causing damage to young shoots, cherelles and pods. Rearing of tea mosquito bug on cocoa was found to be a failure in the present study hence Helopeltis theivora Waterhouse was maintained on the alternate host mile-a-minute (Mikania micrantha Kunth) under laboratory condition in insect rearing cages. Using freshly reared tea mosquito bugs twenty cocoa hybrids were screened for resistance and were ranked after 72 hours of screening. All the hybrids having less than three lesions per plant in seedlings and less than 33 lesions on pods were ranked as highly resistant. It was observed that hybrids classified as highly resistant had significantly higher phenol content than those classified as susceptible. The significantly low phenol content in the susceptible hybrids suggests that phenolics have a function in mediating resistance to tea mosquito bug in cocoa. From correlation and regression analysis it is confirmed that phenol content can be used as a potential marker indicating the level of resistance of cocoa hybrids against tea mosquito bug resistance.

The current research work was carried out to evaluate the genetic diversity associated with thirty cocoa accessions resistant to Phytophthora. The cluster analysis and principal component analysis evaluated the genetic variability among the different genotypes. The highest number of genotypes were observed in cluster III (8) when qualitative traits were considered. In quantitative cluster analysis, most of the genotypes were placed in separate clusters due to high variability in the germplasm. Principal component (PC) analysis showed that the first three PCs with more than one Eigen-value contributed to 79.9 per cent of variability for different traits. When qualitative and quantitative characters were considered along with resistant reaction, clusters with genotypes highly resistant to Phytophthora pod rot were observed. Hybridization programme involving these resistant hybrids belonging to diverse clusters will result in high yielding hybrids with ample resistance.

Groundnut, a crop rich in nutrients, originated in South America and spread to the rest of the world. Cultivated groundnut contains a fraction of the genetic diversity present in their closely related wild relatives, which is not more than 13 %, due to domestication bottleneck. Closely related ones are placed in section Arachis , which have not been extensively utilized until now due to ploidy differences between the cultivated and wild relatives. In order to overcome Arachis species utilization bottleneck, a large number of tetraploid synthetics were developed at the Legume Cell Biology Unit of Grain Legumes Program, ICRISAT, India. Evaluation of synthetics for some of the constraints showed that these were good sources of multiple disease and pest resistances. Some of the synthetics were utilized by developing ABQTL mapping populations, which were screened for some biotic and abiotic constraints. Phenotyping experiments showed ABQTL progeny lines with traits of interest necessary for the improvement of groundnut.