Herbicides are the foundation of weed control in commercial crop-production systems. However, herbicide-resistant (HR) weed populations are evolving rapidly as a natural response to selection pressure imposed by modern agricultural management activities. Mitigating the evolution of herbicide resistance depends on reducing selection through diversification of weed control techniques, minimizing the spread of resistance genes and genotypes via pollen or propagule dispersal, and eliminating additions of weed seed to the soil seedbank. Effective deployment of such a multifaceted approach will require shifting from the current concept of basing weed management on single-year economic thresholds.

Engaging large numbers of undergraduates in authentic scientific discovery is desirable but difficult to achieve. We have developed a general model in which faculty and teaching assistants from diverse academic institutions are trained to teach a research course for first-year undergraduate students focused on bacteriophage discovery and genomics. The course is situated within a broader scientific context aimed at understanding viral diversity, such that faculty and students are collaborators with established researchers in the field. The Howard Hughes Medical Institute (HHMI) Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) course has been widely implemented and has been taken by over 4,800 students at 73 institutions. We show here that this alliance-sourced model not only substantially advances the field of phage genomics but also stimulates students’ interest in science, positively influences academic achievement, and enhances persistence in science, technology, engineering, and mathematics (STEM) disciplines. Broad application of this model by integrating other research areas with large numbers of early-career undergraduate students has the potential to be transformative in science education and research training.

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists.

Field and greenhouse experiments were conducted to determine the level of glyphosate resistance in common waterhemp populations from Platte County (MO1) and Holt County, Missouri (MO2), and to determine the level and distribution of resistance to glyphosate, acetolactate synthase (ALS)–inhibiting herbicides, and protoporophyrinogen oxidase (PPO)–inhibiting herbicides across the MO1 site. Results from greenhouse experiments revealed that the MO1 and MO2 waterhemp populations were 19 and 9 times more resistant to glyphosate, respectively, than a susceptible waterhemp population. In field experiments, greater than 54% of waterhemp at the MO1 site survived 1.7 kg glyphosate ae ha−1(twice the labeled rate) 6 wk after treatment. Tank-mix combinations of ALS- and PPO-inhibiting herbicides with glyphosate also failed to provide complete control of the waterhemp population at the MO1 site. Collection and screening of seed from individual female waterhemp accessions revealed multiple resistance to glyphosate, ALS-, and PPO-inhibiting herbicides across the MO1 site. All 14 waterhemp accessions collected across the MO1 site exhibited greater than 65% survival to 2× rates of glyphosate and thifensulfuron, and these accessions were spread across a 5-km2(503-ha) area. Four waterhemp accessions collected across a 0.9-km2(87-ha) area also exhibited 26 to 38% survival to 2× rates of lactofen. The results from these experiments provide evidence and confirmation of the first glyphosate-resistant waterhemp population in the United States and reveal that multiple resistance to glyphosate, ALS-, and PPO-inhibiting herbicides can occur in waterhemp.

Synthetic auxin herbicides have long been utilized for the selective control of broadleaf weeds in a variety of crop and noncrop environments. Recently, two agrochemical companies have begun to develop soybean with resistance to 2,4-D and dicamba which might lead to an increase in the application of these herbicides in soybean production areas in the near future. Additionally, little research has been published pertaining to the effects of a newly-discovered synthetic auxin herbicide, aminocyclopyrachlor, on soybean phytotoxicity. Two field trials were conducted in 2011 and 2012 to evaluate the effects of sublethal rates of 2,4-D amine, aminocyclopyrachlor, aminopyralid, clopyralid, dicamba, fluroxypyr, picloram, and triclopyr on visible estimates of soybean injury, height reduction, maturity, yield, and yield components. Each of these herbicides was applied to soybean at the V3 and R2 stages of growth at 0.028, 0.28, 2.8, and 28 g ae ha−1. Greater height reductions occurred with all herbicides, except 2,4-D amine and triclopyr when applied at the V3 compared to the R2 stage of growth. Greater soybean yield loss occurred with all herbicides except 2,4-D amine when applied at the R2 compared to the V3 stage of growth. The only herbicide applied that resulted in no yield loss at either stage was 2,4-D amine. When applied at 28 g ae ha−1at the V3 stage of growth, the general order of herbicide-induced yield reductions to soybean from greatest to least was aminopyralid > aminocyclopyrachlor = clopyralid = picloram > fluroxypyr > triclopyr > dicamba > 2,4-D amine. At the R2 stage of growth, the general order of herbicide-induced yield reductions from greatest to least was aminopyralid > aminocyclopyrachlor = picloram > clopyralid > dicamba > fluroxypyr = triclopyr > 2,4-D amine. Yield reductions appeared to be more correlated with seeds per pod than to pods per plant and seed weight. An 18- to 26-d delay in soybean maturity also occurred with R2 applications of all synthetic auxin herbicides at 28 g ae ha−1except 2,4-D. Results from this research indicate that there are vast differences in the relative phytotoxicity of these synthetic auxin herbicides to soybean, and that the timing of the synthetic auxin herbicide exposure will have a significant impact on the severity of soybean height and/or yield reductions.