The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval periods. Here, in order to reconstruct the population history of European black rats, we first generate a de novo genome assembly of the black rat. We then sequence 67 ancient and three modern black rat mitogenomes, and 36 ancient and three modern nuclear genomes from archaeological sites spanning the 1st-17th centuries CE in Europe and North Africa. Analyses of our newly reported sequences, together with published mitochondrial DNA sequences, confirm that black rats were introduced into the Mediterranean and Europe from Southwest Asia. Genomic analyses of the ancient rats reveal a population turnover in temperate Europe between the 6th and 10th centuries CE, coincident with an archaeologically attested decline in the black rat population. The near disappearance and re-emergence of black rats in Europe may have been the result of the breakdown of the Roman Empire, the First Plague Pandemic, and/or post-Roman climatic cooling.
We investigated palaeofood web structures using stable isotope analyses on animal bone collagen from four Upper Palaeolithic sites dated to the Early Gravettian (Krems‐Hundssteig and Krems‐Wachtberg: 33–31k cal a bp, Langenlois: 31–29k cal a bp) and to the Early Epigravettian (Kammern‐Grubgraben: 24–20k cal a bp). In both periods, δ13C values show niche partitioning between hare, horse and mammoth on one side, and reindeer and ibex on the other, indicating different diets and habitats between both herbivore groups. The δ15N differences between carnivores and herbivores suggest a difference of one trophic level during the pre‐Last Glacial Maximum (pre‐LGM) period at the Early Gravettian sites and a tendency towards secondary carnivores during the LGM at Kammern‐Grubgraben. δ15N values of pre‐LGM mammoths are elevated in relation to other herbivores but shifted to the level of other herbivores in the LGM. A general δ15N value shift in herbivores of 3.3‰ from the pre‐LGM to the LGM is related to climatic deterioration. This may have led to the disappearance of certain ecological niches and to a shift from broader to overlapping ecological herbivore niches shortly before the LGM, as demonstrated by SIBER analyses.
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