Zervamicins (Zrv) IIA and IIB are membrane modifying peptide antibiotics of fungal origin, characterized by a sequence of 15 amino acid residues. The primary structure of Zrv-IIA contains five alpha-aminoisobutyric acid residues at positions 4, 7, 9, 12 and 14 of the linear peptide. The sequence of Zrv-IIB is similar, but contains a D-isovaline at position 4. When the free amino acid Aib was added to the peptone-glucose culture medium, the fungus Emericellopsis salmosynnemata produced Zrv-IIA as the major secondary metabolite, whereas addition of DL-Iva to the culture led to a high production of Zrv-IIB. This observation is rationalized by a lack of selectivity of the non-ribosomal peptide synthetase with respect to the thiolester activated amino acid substrates during step 12 of peptide synthesis. Analysis of the configuration of the Iva residue of Zrv-IIB showed a high enantiomeric purity of the D-enantiomer, indicating a high stereoselectivity of the peptide synthetase for this substrate.When the culture was supplemented with [(15)N]DL-Iva, the nitrogen isotope was not only found at the D-Iva residue, but surprisingly also at the Aib residues as well as at the proteinogenic residues of Zrv. The partial catabolism of exogenous [(15)N]DL-Iva is explained by the assumption of a decarboxylation-dependent transamination reaction, catalysed by 2,2-dimethylglycine decarboxylase. The same enzyme might also be involved in the reversed carboxylation reactions of acetone and 2-butanone, during the anabolic biosynthesis of Aib and Iva, respectively. Zrv might possibly act as a thermodynamic sink to shift these equilibrium reactions towards the reversed side.
Sugar amino acids (SAAs) are useful building blocks for the design of peptidomimetics and peptide scaffolds. The three-dimensional structures of cyclic hybrid molecules containing the furanoid epsilon-SAA III and several amino acids were elucidated to study the preferred conformation of such an epsilon-SAA and its conformational influence on the backbone of cyclic peptides. NMR-based molecular dynamics simulations and empirical calculations of the cyclic tetramer 1, consisting of two copies of the SAA residue and two amino acids, revealed that it is conformationally restrained. The two SAA residues adopt different conformations. One of them forms an unusual turn, stabilized by an intraresidue nine-member hydrogen bond. The methylene functionalities of the other SAA residue are positioned in such a way that an intraresidue H bond is not possible. The X-ray crystal structure of 1 strongly resembles the solution conformation. Molecular dynamics calculations in combination with NMR analysis were also performed for compounds 2 and 3, which contain the RGD (Arg-Gly-Asp) consensus sequence and were previously shown to inhibit alpha(IIb)beta(3)-receptor-mediated platelet aggregation. The biologically most active compound 2 adopts a preferred conformation with the single SAA residue folded into the nine-member H bond-containing turn. Compound 3, containing an additional valine residue, as compared with compound 2, is conformational flexible. Our studies demonstrate that the furanoid epsilon-SAA III is able to introduce an unusual intraresidue hydrogen bond-stabilized beta-turn-like conformation in two of the three cyclic structures.
The mesoporphyrin dimethyl ester nickel complex has been formylated via the Vilsmeier method. The four possible mono meso-formyl derivatives were isolated and characterized. Wadsworth−Emmons coupling with the anion of (diethylphosphono)acetonitrile converted these aldehydes into the four novel meso acrylonitriles. Brief treatment of these acrylonitrile systems in hot trichloroacetic acid resulted in the formation of four achiral porphyrin derivatives with unprecedented nickel complexes of quino-fused porphyrins. Subsequent removal of the nickel gave four quino-porphyrin free bases: quino[4,4a,5,6-efg]-annulated 7-demethyl-8-deethylmesoporphyrin dimethyl ester 6a, 2Ј-(methoxycarbonyl)quino-[4,4a,5,6-jkl]-annulated 12-demethyl-13-de[2Ј-(methoxycarbonyl)ethyl]mesoporphyrin dimethyl ester 6b, 2Ј-(methoxycarbonyl)quino [4,4a,5,6-qrs]-annulated 18-demethyl-17-de(2Ј-methoxycarbonylethyl)mesoporphyrin dimethyl ester 6c and quino [4,5,6,7-abt]-annulated 2-demethyl-3-deethylmesoporphyrin dimethyl ester 6d. The structures of these systems were unambiguously determined via mass spectroscopy and a plethora of NMR techniques. In the same way, etioporphyrin and octaethylporphyrin were converted into the corresponding peri-condensed quinoporphyrins as products, which shows that the formation of novel peri-
Magic angle spinning NMR spectroscopy has been used to investigate the self-organization of bacteriochlorophylls in chlorosomal light-harvesting antennae. Two model cadmium chlorins were studied that were uniformly 13 C and 15 N enriched in the ring moieties. The chlorin models differ from the natural BChl c in the central metal and the 3-, 12-, 17-, and 20-side chains. One model system has the farnesyl tail replaced by a methyl, whereas the other has a stearyl tail. The 113 Cd MAS NMR signals indicate a five-coordination of the Cd metal. In particular, the combined NMR data show a HO‚‚‚Cd coordination, very similar to the HO‚‚‚Mg coordination in the natural system. Anomalously large 1 H ring-current shifts of up to 10 ppm reveal a dense orderly stacking of the molecules in planar layers, for which a correlation length of at least 24 Å was defined from long-range ring-current shift calculations. In addition, our model structures confirm and validate the essential role of the [3 1 R] and [3 1 S] stereoisomers in the formation of the chlorosomal antennae, as tubular structures are not formed without this chirality. The 3D arrangement of the layers is revealed by intermolecular 13 C-13 C correlations obtained from CP 3 CHHC experiments. With the tail truncated to methyl, a microcrystalline solid is formed with favorable interactions between the planar sheets in a head-to-tail orientation. The stearyl tails lead to a considerably disordered aggregate consisting of both syn and anti layers similar to the chlorosomes, as indicated by a doubling of the N-D signal. These results reveal a balance between relatively strong local interactions and contributions to the free energy of the system associated with a longer length scale. This leads to a robust chlorosome structure, stable against thermodynamic noise, and allows for fine-tuning of the structure.
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