Retrosynthetic planning problem is to analyze a complex molecule and give a synthetic route using simple building blocks. The huge number of chemical reactions leads to a combinatorial explosion of possibilities, and even the experienced chemists often have difficulty to select the most promising transformations. The current approaches rely on human-defined or machine-trained score functions which have limited chemical knowledge or use expensive estimation methods such as rollout to guide the search. In this paper, we propose EG-MCTS, a novel MCTS-based retrosynthetic planning approach, to deal with retrosynthetic planning problem. Instead of exploiting rollout, we build an Experience Guidance Network to learn knowledge from synthetic experiences during the search. Experiments on benchmark USPTO datasets show that, our EG-MCTS gains significant improvement over state-of-the-art approaches both in efficiency and effectiveness. Routes designed by EG-MCTS for real drugs or compounds exhibit the effectiveness of our approach on assisting chemists performing retrosynthetic analysis.
Our EG-MCTS system solves almost a quarter more and twice times faster than the traditional computer-aided MCTS search method. In a comparative experiment with the literature, our computer-generated routes were generally viewed to be equivalent to reported literature routes by chemists.
In retrosynthetic planning, the huge number of possible routes to synthesize a complex molecule using simple building blocks leads to a combinatorial explosion of possibilities. Even experienced chemists often have difficulty to select the most promising transformations. The current approaches rely on human-defined or machine-trained score functions which have limited chemical knowledge or use expensive estimation methods for guiding. Here we propose an experience-guided Monte Carlo tree search (EG-MCTS) to deal with this problem. Instead of rollout, we build an experience guidance network to learn knowledge from synthetic experiences during the search. Experiments on benchmark USPTO datasets show that, EG-MCTS gains significant improvement over state-of-the-art approaches both in efficiency and effectiveness. In a comparative experiment with the literature, our computer-generated routes mostly matched the reported routes. Routes designed for real drug compounds exhibit the effectiveness of EG-MCTS on assisting chemists performing retrosynthetic analysis.
Despite of achieving great success in real life, Deep Reinforcement Learning (DRL) is still suffering from three critical issues, which are data efficiency, lack of the interpretability and transferability. Recent research shows that embedding symbolic knowledge into DRL is promising in addressing those challenges. Inspired by this, we introduce a novel deep reinforcement learning framework with symbolic options. This framework features a loop training procedure, which enables guiding the improvement of policy by planning with action models and symbolic options learned from interactive trajectories automatically. The learned symbolic options help doing the dense requirement of expert domain knowledge and provide inherent interpretabiliy of policies. Moreover, the transferability and data efficiency can be further improved by planning with the action models. To validate the effectiveness of this framework, we conduct experiments on two domains, Montezuma's Revenge and Office World respectively, and the results demonstrate the comparable performance, improved data efficiency, interpretability and transferability.
Retrosynthetic planning problem is to analyze a complex molecule and give a synthetic route using simple building blocks. The huge number of chemical reactions leads to a combinatorial explosion of possibilities, and even the experienced chemists could not select the most promising transformations. The current approaches rely on human-defined or machine-trained score functions which have limited chemical knowledge or use expensive estimation methods such as rollout to guide the search. In this paper, we propose EG-MCTS, a novel MCTS-based retrosynthetic planning approach, to deal with retrosynthetic planning problem. Instead of exploiting rollout, we build an Experience Guidance Network to learn knowledge from synthetic experiences during the search. Experiments on benchmark USPTO datasets show that, our EG-MCTS gains significant improvement over stateof-the-art approaches both in efficiency and effectiveness.
Dealing with planning problems with both discrete logical relations and continuous numeric changes in real-world dynamic environments is challenging. Existing numeric planning systems for the problem often discretize numeric variables or impose convex quadratic constraints on numeric variables, which harms the performance when solving the problem. In this paper, we propose a novel algorithm framework to solve the numeric planning problems mixed with discrete and continuous actions based on gradient descent. We cast the numeric planning with discrete and continuous actions as an optimization problem by integrating a heuristic function based on discrete effects. Specifically, we propose a gradient-based framework to simultaneously optimize continuous parameters and actions of candidate plans. The framework is combined with a heuristic module to estimate the best plan candidate to transit initial state to the goal based on relaxation. We repeatedly update numeric parameters and compute candidate plan until it converges to a valid plan to the planning problem. In the empirical study, we exhibit that our algorithm framework is both effective and efficient, especially when solving non-convex planning problems.
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