The March 2011 earthquake and tsunami resulted in significant damage to the Fukushima Daiichi Nuclear Power Plant (FDNPP) and the subsequent release of radionuclides into the ocean. Here, we investigated the spatial distribution of strontium-90 (90Sr) and cesium-134/cesium-137 (134, 137Cs) in surface seawater of the coastal region near the FDNPP. In the coastal region, 90Sr activity was high, from 0.89 to 29.13 mBq L−1, with detectable FDNPP site-derived 134Cs. This indicated that release of 90Sr from the power plant was ongoing even in May 2013, as was that of 134Cs and 137Cs. 90Sr activities measured at open ocean sites corresponded to background derived from atmospheric nuclear weapons testing fallout. The FDNPP site-derived 90Sr/137Cs activity ratios in seawater were much higher than those in the direct discharge event in March 2011, in river input, and in seabed sediment; those ratios showed large variability, ranging from 0.16 to 0.64 despite a short sampling period. This FDNPP site-derived 90Sr/137Cs activity ratio suggests that these radionuclides were mainly derived from stagnant water in the reactor and turbine buildings of the FDNPP, while a different source with a low 90Sr/137Cs ratio could contribute to and produce the temporal variability of the 90Sr/137Cs ratio in coastal water. We estimated the release rate of 90Sr from the power plant as 9.6 ± 6.1 GBq day−1 in May 2013 on the basis of the relationship between 90Sr and 137Cs activity (90Sr/137Cs = 0.66 ± 0.05) and 137Cs release rate.