The nth and nei genes of Escherichia coli affect the production of endonuclease III and endonuclease VIII, respectively, glycosylases/apurinic lyases that attack DNA damaged by oxidizing agents. Here, we provide evidence that oxidative lethal lesions are repaired by both endonuclease III and endonuclease VIII and that spontaneous mutagenic lesions are repaired mainly by endonuclease III.Endonuclease III (endo III) has an apurinic (AP) lyase activity at apurinic/apyrimidinic sites in DNA and has a DNA glycosylase activity that excises oxidative pyrimidine residues such as thymine glycol (2,5,8,11,14). Escherichia coli mutants defective in endo III (nth mutants) were found to exhibit normal resistance to DNA-damaging agents such as hydrogen peroxide and X rays (7). Since thymine glycol has been shown to be a lethal lesion in vitro (6, 12, 13) and in vivo (10,15,17), and a mutagenic lesion in vitro (4), the possibility existed that alternative pathways for the repair of these damages are present in E. coli. The availability of nth mutants facilitated the identification of a distinct enzyme with similar properties, designated endonuclease VIII (endo VIII) (16). Endo VIII releases modified pyrimidine bases and possesses DNA glycosylase and AP lyase activities. The gene coding for endo VIII was named nei.To understand the role of thymine glycol and modified pyrimidine bases in lethality and mutagenesis, it is important to determine the properties of nei and nth single mutation and nei nth double mutation. We report here the cloning and sequencing of the nei ϩ gene, coding for endo VIII, and the use of the cloned gene to construct an endo VIII-defective mutant of E. coli.Isolation of nei and nth plasmids. The structural gene for endo III (nth) of E. coli was assigned on Clark-Carbon plasmid pLC3-6, which contains DNA fragments at 36 min on the linkage map (18). Therefore, using pLC3-6, a 5-kb EcoRI-KpnI fragment including the nth gene was ligated on pTZ18R, named pTZ18Rnth. The sequence of a portion of this fragment agreed perfectly with that of the nth gene (data not shown).The DNA sequence of the structural gene coding for endo VIII (nei) of E. coli appears in the GenBank database under accession no. U38616. We have previously cloned a 20-kb DNA fragment, named pKY1, containing the structural gene coding for photolyase (phr) of E. coli, which is mapped at 16 min (22). Part of the detailed physical map of pKY1 looks like that of nei. We therefore subcloned the 5-kb PstI fragment from pKY1 to pTZ18R. The DNA sequence of the fragments completely agreed with that of U38616. The detailed restriction map is shown in Fig. 1. Thus, plasmid pTZ18Rnei carries the nei ϩ gene. This finding further shows that the location of the nei gene is about 5 kb clockwise from the phr gene.Construction of nei and nth mutants. In the 5-kb EcoRIKpnI fragment containing nth ϩ , there are two PstI sites, one within the nth gene and the other 37 bp upstream from the ATG start codon. The nth ϩ gene was inactivated by cloning a 1.5-kb chlorampheni...