Pervasive environmental stressors on coral reefs are attributed with shifting the competitive balance in favor of alternative dominants, such as macroalgae. Previous studies have demonstrated that macroalgae compete with corals via a number of mechanisms, including the production of potent primary and secondary metabolites that can influence coral-associated microbial communities. The present study investigates the effects of the Pacific brown macroalga Lobophora sp. (due to the shifting nature of the Lobophora species complex, it will be referred to here as Lobophora sp.) on coral bacterial isolates, coral larvae, and the microbiome associated with the coral Porites cylindrica. Crude aqueous and organic macroalgal extracts were found to inhibit the growth of coral-associated bacteria. Extracts and fractions were also shown to inhibit coral larval settlement and cause mortality at concentrations lower (Ͻ0.3 mg · ml Ϫ1 ) than calculated natural concentrations (4.4 mg · ml Ϫ1 ). Microbial communities associated with coral tissues exposed to aqueous (e.g., hydrophilic) crude extracts demonstrated a significant shift to Vibrio dominance and a loss of sequences related to the putative coral bacterial symbiont, Endozoicomonas sp., based on 16S rRNA amplicon sequencing. This study contributes to growing evidence that macroalgal allelochemicals, dissolved organic material, and native macroalgal microbial assemblages all play a role in shifting the microbial equilibrium of the coral holobiont away from a beneficial state, contributing to a decline in coral fitness and a shift in ecosystem structure.IMPORTANCE Diverse microbial communities associate with coral tissues and mucus, providing important protective and nutritional services, but once disturbed, the microbial equilibrium may shift from a beneficial state to one that is detrimental or pathogenic. Macroalgae (e.g., seaweeds) can physically and chemically interact with corals, causing abrasion, bleaching, and overall stress. This study contributes to a growing body of evidence suggesting that macroalgae play a critical role in shifting the coral holobiont equilibrium, which may promote the invasion of opportunistic pathogens and cause coral mortality, facilitating additional macroalgal growth and invasion in the reef. Thus, macroalgae not only contribute to a decline in coral fitness but also influence coral reef ecosystem structure.KEYWORDS DNA sequencing, Lobophora, Porites, QIIME, coral larvae, coral reef, holobiont, macroalgae, metagenomics, pathogens

Dredging for wild mussels Mytilus edulis Linnaeus, 1758 takes place in marine protected areas (Natura 2000 sites) in Denmark. The fishery is strictly regulated to limit the impact of dredging to the benthic environment, and requires the use of modified lightweight mussel dredges. Nevertheless, the depletion of the benthic macrofauna associated with M. edulis beds after impact from such dredges is yet to be quantified. Here, dredging is shown to result in a significant decline in the density, species richness, and biological traits directly in the dredge track but no significant impact on the community composition. Species richness remained significantly affected 4 mo post dredging, although the positive trend after 4 mo may signal recovery. An effect of dredging was also detected in areas adjacent (approximately 5 m) to the dredge tracks, but needs further investigation to understand this impact. The results provide an estimate of benthic macrofaunal depletion in the dredge track as well as of the short-term recovery, which may be of use in the management of the fishery. Finally, it is suggested that species richness may be a more sensitive indicator than density in a eutrophic and species-poor system.