The algal spring bloom in the Baltic Sea represents an anomaly from the winter-spring bloom patterns worldwide in terms of frequent and recurring dominance of dinoflagellates over diatoms. Analysis of approximately 3500 spring bloom samples from the Baltic Sea monitoring programs revealed (i) that within the major basins the proportion of dinoflagellates varied from 0.1 (Kattegat) to >0.8 (central Baltic Proper), and (ii) substantial shifts (e.g. from 0.2 to 0.6 in the Gulf of Finland) in the dinoflagellate proportion over four decades. During a recent decade (1995–2004) the proportion of dinoflagellates increased relative to diatoms mostly in the northernmost basins (Gulf of Bothnia, from 0.1 to 0.4) and in the Gulf of Finland, (0.4 to 0.6) which are typically ice-covered areas. We hypothesize that in coastal areas a specific sequence of seasonal events, involving wintertime mixing and resuspension of benthic cysts, followed by proliferation in stratified thin layers under melting ice, favors successful seeding and accumulation of dense dinoflagellate populations over diatoms. This head-start of dinoflagellates by the onset of the spring bloom is decisive for successful competition with the faster growing diatoms. Massive cyst formation and spreading of cyst beds fuel the expanding and ever larger dinoflagellate blooms in the relatively shallow coastal waters. Shifts in the dominant spring bloom algal groups can have significant effects on major elemental fluxes and functioning of the Baltic Sea ecosystem, but also in the vast shelves and estuaries at high latitudes, where ice-associated cold-water dinoflagellates successfully compete with diatoms.

The Baltic Sea is affected by a range of human induced environmental pressures such as eutrophication. Here we synthesize the ongoing shift from diatom dominance toward more dinoflagellates in parts of the Baltic Sea during the spring bloom and its potential effects on biogeochemical cycling of key elements (e.g., C, N, and P). The spring bloom is the period with the highest annual primary production and sinking of organic matter to the sediment. The fate of this organic matter is a key driver for material fluxes, affecting ecosystem functioning and eutrophication feedback loops. The dominant diatoms and dinoflagellates appear to be functionally surrogates as both groups are able to effectively exhaust the wintertime accumulation of inorganic nutrients and produce bloom level biomass that contribute to vertical export of organic matter. However, the groups have very different sedimentation patterns, and the seafloor has variable potential to mineralize the settled biomass in the different sub-basins. While diatoms sink quickly out of the euphotic zone, dinoflagellates sink as inert resting cysts, or lyse in the water column contributing to slowly settling phyto-detritus. The dominance by either phytoplankton group thus directly affects both the summertime nutrient pools of the water column and the input of organic matter to the sediment but to contrasting directions. The proliferation of dinoflagellates with high encystment efficiency could increase sediment retention and burial of organic matter, alleviating the eutrophication problem and improve the environmental status of the Baltic Sea.

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