The glucagon-like peptide-1 receptor (GLP-1R) and the glucagon receptor (GCGR) are members of the secretin-like class B family of G-protein-coupled receptors (GPCRs) and have opposing physiological roles in insulin release and glucose homeostasis. The treatment of type 2 diabetes requires positive modulation of GLP-1R to inhibit glucagon secretion and stimulate insulin secretion in a glucose-dependent manner. Here we report crystal structures of the human GLP-1R transmembrane domain in complex with two different negative allosteric modulators, PF-06372222 and NNC0640, at 2.7 and 3.0 Å resolution, respectively. The structures reveal a common binding pocket for negative allosteric modulators, present in both GLP-1R and GCGR and located outside helices V-VII near the intracellular half of the receptor. The receptor is in an inactive conformation with compounds that restrict movement of the intracellular tip of helix VI, a movement that is generally associated with activation mechanisms in class A GPCRs. Molecular modelling and mutagenesis studies indicate that agonist positive allosteric modulators target the same general region, but in a distinct sub-pocket at the interface between helices V and VI, which may facilitate the formation of an intracellular binding site that enhances G-protein coupling.
In deep drinking water reservoir ecosystems, the dynamics and interactions of community compositions of phytoplankton and eukaryotes during the mixing periods are still unclear. Here, morphological characteristics combined with high-throughput DNA sequencing (HTS) were used to investigate the variations of phytoplankton and the eukaryotic community in a large canyon-shaped, stratified reservoir located at the Heihe River in Shaanxi Province for three months. The results showed that Bacillariophyta and Chlorophyta were the dominant taxa of the phytoplankton community, accounting for more than 97% of total phytoplankton abundance, which mainly consisted of Melosira sp., Cyclotella sp., and Chlorella sp., respectively. Illumina Miseq sequencing suggested that the biodiversity of eukaryotes increased over time and that species distribution was more even. Arthropoda (6.63% to 79.19%), Ochrophyta (5.60% to 35.16%), Ciliophora (1.81% to 10.93%) and Cryptomonadales (0.25% to 11.48%) were the keystone taxa in common, contributing over 50% of the total eukaryotic community. Cryptomycota as a unique fungus was observed to possess significant synchronization with algal density, reaching a maximum of 10.70% in December (when the algal density distinctly decreased) and suggesting that it might affect the growth of algae through parasitism. Co-occurrence network patterns revealed the complicated and diverse interactions between eukaryotes and phytoplankton, suggesting that eukaryotes respond to variations in dynamic structure of the phytoplankton community, although there might be antagonistic or mutualistic interactions between them. Redundancy analysis (RDA) results showed that environmental variables collectively explained a 96.7% variance of phytoplankton and 96.3% variance of eukaryotic microorganisms, indicating that the temporal variations of phytoplankton and eukaryotic microorganisms were significantly affected by environmental conditions. This study shows that potential interactions exist between phytoplankton and eukaryotic microorganism communities, andcould improve our understanding of the ecological roles of phytoplankton and eukaryotic microorganisms in changing aquatic ecosystems. However, long-term investigations are necessary in order to obtain comprehensive understandings of their complicated associations.
DNA encoded chemical libraries (DELs) link the powers of genetics and chemical synthesis via combinatorial optimization. Through combinatorial chemistry, DELs can grow to the unprecedented size of billions to trillions. To take full advantage of the DEL approach, linking the power of genetics directly to chemical structures would offer even greater diversity in a finite chemical world. Natural products have evolved an incredible structural diversity along with their biological evolution. Herein, we used traditional Chinese medicines (TCMs) as examples in a late‐stage modification toolbox approach to annotate these complex organic compounds with amplifiable DNA barcodes, which could be easily incorporated into a DEL. The method of end‐products labeling also generates a cluster of isomers with a single DNA tag at different sites. These isomers provide an additional spatial diversity for multiple accessible pockets of targeted proteins. Notably, a novel PARP1 inhibitor from TCM has been identified from the natural products enriched DEL (nDEL).
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