Many breeds of modern cattle are naturally horned, and for sound husbandry management reasons the calves frequently undergo procedures to physically remove the horns by disbudding or dehorning. These procedures are however a welfare concern. Selective breeding for polledness – absence of horns – has been effective in some cattle breeds but not in others (Bos indicus genotypes) due in part to the complex genetics of horn phenotype. To address this problem different approaches to genetic testing which provide accurate early-in-life prediction of horn phenotype have been evaluated, initially using microsatellites (MSAT) and more recently single nucleotide polymorphism (SNP). A direct gene test is not effective given the genetic heterogeneity and large-sized sequence variants associated with polledness in different breeds. The current study investigated 39,943 animals of multiple breeds to assess the accuracy of available poll testing assays. While the standard SNP-based test was an improvement on the earlier MSAT haplotyping method, 1999 (9.69%) out of 20,636 animals tested with this SNP-based assay did not predict a genotype, most commonly associated with the Indicus-influenced breeds. The current study has developed an optimized poll gene test that resolved the vast majority of these 1999 unresolved animals, while the predicted genotypes of those previously resolved remained unchanged. Hence the optimized poll test successfully predicted a genotype in 99.96% of samples assessed. We demonstrated that a robust set of 5 SNPs can effectively determine PC and PF alleles and eliminate the ambiguous and undetermined results of poll gene testing previously identified as an issue in cattle.

Polymorphisms located in the genes ABCG2, DGAT1, LEP, PRLR, RORC, CAPN1 and CAST previously have been associated with milk or meat production traits. In this study, these polymorphisms were examined for significant effects on reproductive traits [age at puberty (AGECL), post-partum anoestrus interval (PPAI) and the ability ovulate prior to weaning (PW)] and on a panel of correlated traits such as weight, growth and serum concentration of insulin-like growth factor I. The effects of the polymorphisms were examined in two samples of tropically adapted beef cattle: Brahman (N = 932) and Tropical Composites (N = 1097). A polymorphism in the gene DGAT1 was associated with age at puberty in the combined sample (P = 0.042), and two polymorphisms in CAPN1 were associated with PPAI (P = 0.033) and with the ability ovulate PW (P = 0.017). The favourable allele for reproductive traits was not always the favourable allele associated with production traits. The effects of these polymorphisms on reproductive traits were small compared to their effects on the traits for which they were originally discovered.

Abstract. The objective of this experiment was to quantify differences in feed efficiency and feeding behaviour of 470 heifers and steers by Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires mated to Brahman dams. Animals were bred in subtropical Queensland and finished in a temperate New South Wales feedlot. Animals averaged 598 days of age and 425.8 kg at the start of the feed intake test period. Sire breeds did not differ for eating rate, feed conversion ratio or relative growth rate. Generally, higher daily feed intakes (DFI) corresponded with higher average daily gains (ADG). Straightbred Brahmans fed the most frequently (16.6 AE 0.8 sessions/day; P < 0.05) but spent the least time eating of all breeds (67.4 AE 2.7 min/day; P < 0.001). Least squares means for Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sired progeny, respectively, for residual feed intake (RFI; P < 0.05) were 0.02 AE 0.16, 0.14 AE 0.13, -0.10 AE 0.23, 0.54 AE 0.17, -0.27 AE 0.18, 0.29 AE 0.18, -0.46 AE 0.16 and -0.21 AE 0.13 kg/day, and for ADG (P < 0.001) were 1.06 AE 0.05, 1.17 AE 0.04, 1.52 AE 0.08, 1.47 AE 0.06, 1.46 AE 0.06, 1.46 AE 0.06, 1.35 AE 0.06 and 1.38 AE 0.05 kg/day. While straightbred Brahmans did not differ from all other sire breeds for RFI, their lower appetite relative to crossbred contemporaries resulted in the lowest DFI (P < 0.001) and lowest ADG (P < 0.001) overall. Angus sired crosses were the least efficient feeders and spent the most time eating, consumed the most feed and had the highest RFI, but were not significantly different to Santa Gertrudis and Shorthorn crosses for these traits. Angus sired crosses spent 24.1 and 15.4 min/day more time eating (P < 0.001) than straightbred Brahmans and Charolais crosses, and consumed 35 and 13% more feed (P < 0.001) respectively. Charolais sired crosses were the most feed efficient with the lowest RFI and intermediate DFI, and did not differ significantly from the highest ranking sire breeds for ADG or Kleiber ratio. While Belmont Red crosses did not differ from all breeds for RFI, they had significantly lower DFI than British and Santa Gertrudis crosses resulting in lower ADG (P < 0.001) relative to these sire breeds. Therefore, selection of Charolais, Hereford, Limousin and Santa Gertrudis sire breeds would result in the most feed efficient (low RFI) crosses with Brahman without any sacrifice in ADG.

Brahmans are known to have poorer carcass quality relative to Bos taurus breeds and crossbreds under temperate environments; however, little is known of their performance in subtropical environments. The Cooperative Research Centre for Cattle and Beef Industry (Meat Quality) initiated a crossbred progeny test experiment to compare straightbred Brahmans with Brahman crossbreds finished on pasture and grain, in subtropical and temperate environments, to carcass quality specifications of Australian domestic and export markets. Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires were mated to Brahman females in subtropical Queensland over 3 years to produce 1750 progeny. At a common age at slaughter, Charolais crossbreds had the highest hot carcass weight (CWT) but were not significantly heavier than Limousin or British crossbred progeny. At common carcass weights, breeds within breed type (British, Continental, tropically adapted) performed similarly. British and Santa Gertrudis crossbreds had the fattest carcasses and lowest yields. British and Belmont Red crossbreds had the highest intramuscular fat percentage (IMF). Continental crossbreds had the highest retail beef yield (RBY), kilograms of retail primals (RTPM) and percent retail primals (pcRTPM) and leanest carcasses. Brahmans had the lowest CWT, intermediate subcutaneous fat cover, high yields and low IMF. Animals finished in the subtropics on pasture were significantly older, leaner and had higher RBY, RTPM and pcRTPM than subtropical feedlot-finished contemporaries. Temperate feedlot animals had significantly more IMF, less subcutaneous fat at the P8 site and slightly lower yields than subtropical feedlot contemporaries, indicating possible effects of postweaning growth path on fat distribution. Belmont Red crossbreds demonstrated the advantages of adaptation with the highest IMF in both subtropical finishing regimes, while Angus progeny had the highest IMF in the temperate feedlot environment and highest IMF overall when analysed across finishing regimes. Significant interactions were mainly the result of scale effects rather than breed re-ranking for carcass traits across markets and finishing regimes. Therefore, breeds that performed well for certain carcass traits in subtropical environments performed consistently for those traits in temperate environments relative to other sire breeds, regardless of market endpoint or finishing nutrition.

Abstract. Market demand for a reliable supply of beef of consistently high eating quality led the Cooperative Research Centre for Cattle and Beef Industry (Meat Quality) to initiate a crossbreeding progeny test program to quantify objective and sensory meat quality differences between straightbred and first-cross Brahman cattle. Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires were mated to Brahman females over 3 years to produce 1346 steers and heifers in subtropical northern Australia. Calves were assigned within sire by age and weight to one of three market endpoints (domestic, Korean or Japanese), one of two finishing environments (subtropical or temperate) and one of two finishing diets (pasture or feedlot). Average carcass weights were 227, 288 and 327 kg for domestic, Korean and Japanese markets respectively. Only steers were finished for the Japanese market. The effects of sire breed, finishing regime, market endpoint and sex on sensory meat quality of four attributes score (CMQ4), ossification score and Warner-Bratzler shear force (SF), instron compression (IC), ultimate pH and percent cooking loss (CL) on the M. longissimus thoracis et lumborum (LT) and M. semitendinosus (ST) were determined. Straightbred Brahmans had the highest SFLT (5.39 AE 0.07; P < 0.001), ICLT (1.89 AE 0.02; P < 0.05) and CL in both muscles (P < 0.05). Straightbred Brahmans were the only genotype that failed to meet minimum CMQ4 grading standards (38.3; P < 0.001). Progeny with up to 75% Brahman content successfully met minimum objective and sensory meat quality consumer thresholds for tenderness (IC <2.2 kg, SF <5.0 kg; CMQ4 >46.5). There was little difference between crossbred progeny for most meat quality traits. All feedlot-finished animals were slaughtered at domestic, Korean and Japanese market weights by 24 months of age, with minimal differences in objective measures of meat quality between markets. The IC measures for all sire breeds were below 2.2 kg, indicating connective tissue toughness was not an important market consideration in feedlot-finished animals slaughtered by 24 months of age. Pasture finishing adversely affected all meat quality traits (P < 0.001) except CLST, with Korean and Japanese market animals having unacceptably tough SF, IC and CMQ4 measures. This was attributed to their older age at slaughter (31 and 36 months respectively), resulting from their seasonally interrupted growth path. While domestic animals slaughtered at 25 months of age off pasture had unacceptably high SF and IC, CMQ4 was acceptable. Subtropical feedlot animals had slightly more desirable (n.s.) SF and IC relative to temperate feedlot animals, whereas temperate feedlot animals had higher CMQ4 (P < 0.001). Genotype · environment interactions were not important.