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We performed a genome-wide association study and fine mapping using two methods (single marker regression: frequentist approach and Bayesian C (BayesC): fitting selected single nucleotide polymorphisms (SNPs) in a Bayesian framework) through three high-density SNP chip platforms to analyze milk production phenotypes in Korean Holstein cattle (n = 2780). We identified four significant SNPs for each phenotype in the single marker regression model: AX-311625843 and AX-115099068 on Bos taurus autosome (BTA) 14 for milk yield (MY) and adjusted 305-d fat yield (FY), respectively, AX-428357234 on BTA 18 for adjusted 305-d protein yield (PY), and AX-185120896 on BTA 5 for somatic cell score (SCS). Using the BayesC model, we discovered significant 1-Mb window regions that harbored over 0.5% of the additive genetic variance effects for four milk production phenotypes. The concordant significant SNPs and 1-Mb window regions were characterized into quantitative trait loci (QTL). Among the QTL regions, we focused on a well-known gene (diacylglycerol O-acyltransferase 1 (DGAT1)) and newly identified genes (phosphodiesterase 4B (PDE4B), and anoctamin 2 (ANO2)) for MY and FY, and observed that DGAT1 is involved in glycerolipid metabolism, fat digestion and absorption, metabolic pathways, and retinol metabolism, and PDE4B is involved in cAMP signaling. Our findings suggest that the candidate genes in QTL are strongly related to physiological mechanisms related to the fat production and consequent total MY in Korean Holstein cattle.

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Abstract:The aims of this study were to calculate greenhouse gas (GHG) emissions and to identify the trends of GHG emission intensity, based on meat production from the livestock sector in Indonesia, which had not been done before. The total emissions from the livestock sector from 2000 to 2015 in Indonesia were calculated using the 2006 Intergovernmental Panel on Climate Change Guideline (2006 IPCC GL) using Tier 1 and Tier 2, with its default values and some of the country specific data that were found in the grey literature. During 2000 to 2015, the change from the Tier 1 to Tier 2 methods resulted in an approximately 7.39% emission decrease from enteric fermentation and a 4.24% increase from manure management, which resulted in a 4.98% decrease in the total emissions. The shared emission from manure management increased by about 9% and 6% using Tier 1 and Tier 2, respectively. In contrast with the total emissions, the overall emission intensity in Indonesia decreased (up to 60.77% for swine), showing that the livestock productivity in Indonesia has become more efficient. In order to meet the meat demand with less GHG emissions, chicken farming is one option to be developed. The increased emission and share from manure management indicated that manure management system needs to be of concern, especially for beef cattle and swine.

A goal for swine farming is the improvement in the number of live-born and weaned piglets per sow. Hence, the effect of parities should consider the correlation between the component traits of reproductive performance, weaning, and duration. Sows were housed in farrowing pens (W 2.2 × D 1.8 × H 1.2 m) on a partially slatted plastic floor. Twenty sows used in this study were between the first and sixth parity in gilts (P1), parity 2–5 (P3), and parity 6–9 (P6). Data collection by parity was classified into three categories: (1) reproduction performance (gestation length, total number of piglets born, number of piglets live born, number of piglets stillborn, total piglet birth weight; (2) weaning traits (weaning period, number of piglets weaning, total piglets weaning weight); (3) duration traits (farrowing duration, placenta expulsion duration, time from last piglet to first placenta, average birth interval, and tail wagging behavior). Gestation length was higher in P6 than P1 and P3 of different parity sows. The maximum value in P1 and P3 was 117 days, but the median value in P6 was 117 days ( p < 0.05). The total number of piglets born ( p = 0.113), number of piglets live born ( p = 0.118), number of still piglets born ( p = 0.151), and total piglet birth weight ( p = 0.117) were not affected by parity. The number of live piglets was higher than the other parities by an average of 15.6 ± 2.1 in P1. The duration of farrowing was the lowest at 22.2 min in P6, but the maximum value was 42.2 min more than other parities ( p = 0.355). Weaning traits of sows also did not differ significantly ( p > 0.05), but the weaning period from P1 was lower than that of the other parities ( p = 0.170). The number of piglets weaned was 10 heads on average in P1, P3, and P6 ( p < 0.05). However, the mean values of the total piglet weaning weight ( p = 0.377) of P6 (62.0 10.4 kg) were higher than those of P1 (54.9 10.2 kg) and P3 (58.4 13.6 kg). The placenta expulsion duration was higher in P6 than that in P1 and P3 ( p = 0.447). The time from the last piglet to first placenta was be lower in P3 than that of the other parities ( p = 0.206). The average birth interval was higher in P3 than that of the other parities ( p = 0.156). Tail wagging (count) behavior was higher in P6 than in the other parities ( p = 0.065). The data showed that the reproduction performance, total piglets born, and weight were higher in the gilts group, and higher in the weaning trait than that in the P6 group. This study examined the relationship between reproductive performance, birth interval and tail motion according to sow parity. Regarding duration, farrowing duration was lower in P6 than t...