The volume and complexity of diagnostic imaging is increasing at a pace faster than the availability of human expertise to interpret it. Artificial intelligence has shown great promise in classifying two-dimensional photographs of some common diseases and typically relies on databases of millions of annotated images. Until now, the challenge of reaching the performance of expert clinicians in a real-world clinical pathway with three-dimensional diagnostic scans has remained unsolved. Here, we apply a novel deep learning architecture to a clinically heterogeneous set of three-dimensional optical coherence tomography scans from patients referred to a major eye hospital. We demonstrate performance in making a referral recommendation that reaches or exceeds that of experts on a range of sight-threatening retinal diseases after training on only 14,884 scans. Moreover, we demonstrate that the tissue segmentations produced by our architecture act as a device-independent representation; referral accuracy is maintained when using tissue segmentations from a different type of device. Our work removes previous barriers to wider clinical use without prohibitive training data requirements across multiple pathologies in a real-world setting.
Approximate Bayesian computation (ABC) has gained popularity over the past few years for the analysis of complex models arising in population genetics, epidemiology and system biology. Sequential Monte Carlo (SMC) approaches have become work-horses in ABC. Here we discuss how to construct the perturbation kernels that are required in ABC SMC approaches, in order to construct a sequence of distributions that start out from a suitably defined prior and converge towards the unknown posterior. We derive optimality criteria for different kernels, which are based on the Kullback-Leibler divergence between a distribution and the distribution of the perturbed particles. We will show that for many complicated posterior distributions, locally adapted kernels tend to show the best performance. We find that the added moderate cost of adapting kernel functions is easily regained in terms of the higher acceptance rate. We demonstrate the computational efficiency gains in a range of toy examples which illustrate some of the challenges faced in real-world applications of ABC, before turning to two demanding parameter inference problems in molecular biology, which highlight the huge increases in efficiency that can be gained from choice of optimal kernels. We conclude with a general discussion of the rational choice of perturbation kernels in ABC SMC settings.
Advances in machine learning (ML) and artificial intelligence (AI) present an opportunity to build better tools and solutions to help address some of the world's most pressing challenges, and deliver positive social impact in accordance with the priorities outlined in the United Nations' 17 Sustainable Development Goals (SDGs). The AI for Social Good (AI4SG) movement aims to establish interdisciplinary partnerships centred around AI applications towards SDGs. We provide a set of guidelines for establishing successful long-term collaborations between AI researchers and application-domain experts, relate them to existing AI4SG projects and identify key opportunities for future AI applications targeted towards social good. T he challenges facing our world today have grown in complexity and increasingly require large, coordinated efforts: between countries; and across a broad spectrum of governmental and non-governmental organisations (NGOs) and the communities they serve. These coordinated efforts work towards supporting the Sustainable Development Goals (SDGs) 1 , and there continues to be an important role for technology to support the developmental organisations and efforts active in this field to deliver the highest impact. Artificial intelligence (AI) and machine learning (ML) have attracted widespread interest in recent years due to a series of high-profile successes. AI has shown success in games and
In this paper we discuss new adaptive proposal strategies for sequential Monte Carlo algorithms-also known as particle filters-relying on criteria evaluating the quality of the proposed particles. The choice of the proposal distribution is a major concern and can dramatically influence the quality of the estimates. Thus, we show how the long-used coefficient of variation (suggested by Kong et al. in J. Am. Stat. Assoc. 89(278-288):590-599, 1994) of the weights can be used for estimating the chi-square distance between the target and instrumental distributions of the auxiliary particle filter. As a by-product of this analysis we obtain an auxiliary adjustment multiplier weight type for which this chi-square distance is minimal. Moreover, we establish an empirical estimate of linear complexity of the Kullback-Leibler divergence between the involved distributions. Guided by these results, we discuss adaptive designing of the particle filter proposal distribution and illustrate the methods on a numerical example.
Early prediction of patient outcomes is key to unlocking the potential for targeted preventive care. This protocol describes a practical workflow for developing deep learning risk models for early prediction of various clinical and operational outcomes using structured electronic health record (EHR) data, discussing the prediction of acute kidney injury (AKI) as an exemplar. The protocol consists of 34 steps grouped into the following stages: formal problem definition, data pre-processing, architecture selection, calibration and uncertainty estimation, generalisability evaluation. Additionally, we demonstrate the application of this protocol to three other endpoints -mortality, length of stay and 30-day hospital readmission -for both continuous predictions (e.g. triggered every 6h) and static predictions (e.g. triggered at 24h post admission). The performance on these additional endpoints exceeded most comparable literature benchmarks. This protocol is accompanied by an open-source codebase that illustrates key considerations for EHR modeling and may be customised to alternate data formats and prediction tasks.
There are almost two million people in the United Kingdom living with sight loss, including around 360,000 people who are registered as blind or partially sighted. Sight threatening diseases, such as diabetic retinopathy and age related macular degeneration have contributed to the 40% increase in outpatient attendances in the last decade but are amenable to early detection and monitoring. With early and appropriate intervention, blindness may be prevented in many cases.
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