The class I terpenoid cyclase epi-isozizaene synthase (EIZS) utilizes the universal achiral isoprenoid substrate, farnesyl diphosphate, to generate epi-isozizaene as the predominant sesquiterpene cyclization product and at least five minor sesquiterpene products, making EIZS an ideal platform for the exploration of fidelity and promiscuity in a terpenoid cyclization reaction. The hydrophobic active site contour of EIZS serves as a template that enforces a single substrate conformation, and chaperones subsequently formed carbocation intermediates through a well-defined mechanistic sequence. Here, we have used the crystal structure of EIZS as a guide to systematically remold the hydrophobic active site contour in a library of 26 site-specific mutants. Remolded cyclization templates reprogram the reaction cascade not only by reproportioning products generated by the wild-type enzyme but also by generating completely new products of diverse structure. Specifically, we have tripled the overall number of characterized products generated by EIZS. Moreover, we have converted EIZS into six different sesquiterpene synthases: F96A EIZS is an (E)-β-farnesene synthase, F96W EIZS is a zizaene synthase, F95H EIZS is a β-curcumene synthase, F95M EIZS is a β-acoradiene synthase, F198L EIZS is a β-cedrene synthase, and F96V EIZS and W203F EIZS are (Z)-γ-bisabolene synthases. Active site aromatic residues appear to be hot spots for reprogramming the cyclization cascade by manipulating the stability and conformation of critical carbocation intermediates. A majority of mutant enzymes exhibit only relatively modest 2–100-fold losses of catalytic activity, suggesting that residues responsible for triggering substrate ionization readily tolerate mutations deeper in the active site cavity.
Omega-3 polyunsaturated fatty acids (PUFAs) exert an anticancer effect by affecting multiple cellular mechanisms leading to inhibition of proliferation and induction of apoptosis. It is well known that breast cancer comprises distinct molecular subtypes which differ in their responsiveness to therapeutic and preventive agents. We tested the hypothesis that n-3FA may preferentially affect triple-negative breast cancer cells for which no targeted intervention is presently available. The in vitro antiproliferative effects of n-3 PUFA docosahexaenoic acid (DHA) and its metabolite, 4-OH-DHA as well as its putative metabolite 4-OXO-DHA, were tested in five triple-negative human basal breast cell lines at different stages of transformation (MCF-10F, trMCF, bsMCF, MDA-MB-231, and BT-549) and three luminal breast cancer cell lines (MCF-7, T-47D, and SK-BR-3). Cell proliferation was measured with the tetrazolium MTT (3-(4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide) assay. DHA and its oxidized derivatives significantly inhibited cell proliferation (20–90% reduction) of both basal and luminal breast cancer cell lines. The inhibitory effect was more pronounced on triple-negative basal breast cancer cell lines as compared to luminal breast cancer cell lines after 4-OXO-DHA treatment. Our data provide novel information regarding the preferential antitumor effect of oxidized derivatives of DHA on basal type breast cancer.
Archaea are uniquely adapted to thrive in harsh environments, and one of these adaptations involves the archaeal membrane lipids, which are characterized by their isoprenoid alkyl chains connected via ether linkages to glycerol 1-phosphate. The membrane lipids of the thermophilic and acidophilic euryarchaeota Thermoplasma volcanium are exclusively glycerol dibiphytanyl glycerol tetraethers. The first committed step in the biosynthetic pathway of these archaeal lipids is the formation of the ether linkage between glycerol 1-phosphate and geranylgeranyl diphosphate, and is catalyzed by the enzyme geranylgeranylglyceryl phosphate synthase (GGGPS). The 1.72 Å resolution crystal structure of GGGPS from T. volcanium (TvGGGPS) in complex with glycerol and sulfate is reported here. The crystal structure reveals TvGGGPS to be a dimer, which is consistent with the absence of the aromatic anchor residue in helix 5a that is required for hexamerization in other GGGPS homologs; the hexameric quaternary structure in GGGPS is thought to provide thermostability. A phylogenetic analysis of the Euryarchaeota and a parallel ancestral state reconstruction investigated the relationship between optimal growth temperature and the ancestral sequences. The presence of an aromatic anchor residue is not explained by temperature as an ecological parameter. An examination of the active site of the TvGGGPS dimer revealed that it may be able to accommodate longer isoprenoid substrates, supporting an alternative pathway of isoprenoid membrane-lipid synthesis.
Antimicrobial peptides (AMPs) are a class of naturally occurring biomolecules found in all multicellular organisms, and are used as a first line of defense for plants and animals. AMPs have been found to cause bacterial membrane rupture and in some cases they also inhibit intracellular function, in both cases resulting in bacterial lysis and death. A broad collection of AMPs have been discovered that can selectively target bacteria, yeasts, fungi, viruses, and even cancer cells. For example, AMPs that target bacteria are typically positively charged, and therefore interact via electrostatic interactions with negatively charged bacterial membranes. Cathelicidins, are small, cationic, amphiphilic AMPs found in many mammalian species. Cathelicidins exibit a broad range of antimicrobial activity against fungi, bacteria, and enveloped viruses, allowing for innate immunity in the skin. LL‐37 is the sole member of the human cathelicidins. Numerous studies have investigated the structure and function of LL‐37, in an effort to develop antimicrobial therapeutics based on its core structure. Many of these potential therapeutics rely on automated peptide synthesis. We seek to contribute to the understanding of the LL‐37 peptide structure and function by further investigating key residues which are required for antimicrobial activity, and optimize the expression of recombinant LL‐37‐based peptides in E.coli. A structure‐based design strategy informed the construction of a series of mutant LL‐37 peptides, that were generated using site‐directed mutagenesis. The following mutants were investigated: a series of single amino acid substitutions, G14P, K12R, K18R, K25R, addition of a hydrophobic tail (LLAA) and hydrophilic tail (LRQA). Cloning was achieved using the ThermoFisher Champion pET SUMO Protein Expression System, and sequences were confirmed using Sanger sequencing. The 11‐kD SUMO (small ubiquitin‐related modifier) on the C‐terminus of the recombinant protein enhances the expression and solubility of the LL‐37 peptide in E. coli. The His‐tagged, LL‐37‐SUMO peptides are expressed in BL21(DE3) E. coli, and following removal of the SUMO and His tags, ongoing studies examining the activity of the recombinant peptides against gram‐positive and gram‐negative pathogens continues.
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