Background: Semi-automating the analyses of accelerometry data makes it possible to synthesize large data sets. However, when constructing activity budgets from accelerometry data, there are many methods to extract, analyse and report data and results. For instance, machine learning is a robust approach to classifying data. We used a new method, super learning, that combines base learners (different machine learning methods) in an optimal manner to achieve overall improved accuracy. Other facets of super learning include the number of behavioural categories to predict, the number of epochs (sample window size) used to split data for training and testing and the parameters on which to train the models. Results:The super learner accurately classified behaviour categories with higher accuracy and lower variance than comparative models. For all models tested, using four behaviours, in comparison with six, achieved higher rates of accuracy. The number of epochs chosen also affected the accuracy with smaller epochs (7 and 13) performing better than longer epochs (25 and 75). Conclusions:Correct model selection, training and testing are imperative to creating reliable and valid classification models. To do so means model fitting must use a wide array of selection criteria. We evaluated a number of these including model, number of behaviours to classify and epoch length and then used a parameter grid search to implement the models. We found that all criteria tested contributed to the models' overall accuracies. Fewer behaviour categories and shorter epoch length improved the performance of all models tested. The super learner classified behaviours with higher accuracy and lower variance than other models tested. However, when using this model, users need to consider the additional human and computational time required for implementation. Machine learning is a powerful method for classifying the behaviour of animals from accelerometers. Care and consideration of the modelling parameters evaluated in this study are essential when using this type of statistical analysis.
Distinguishing the factors that influence activity within a species advances understanding of their behavior and ecology. Continuous observation in the marine environment is not feasible but biotelemetry devices provide an opportunity for detailed analysis of movements and activity patterns. This study investigated the detail that calibration of accelerometers measuring root mean square (RMS) acceleration with video footage can add to understanding the activity patterns of male and female Port Jackson sharks (Heterodontus portusjacksoni) in a captive environment. Linear regression was used to relate RMS acceleration output to time‐matched behavior captured on video to quantify diel activity patterns. To validate captive data, diel patterns from captive sharks were compared with diel movement data from free‐ranging sharks using passive acoustic tracking. The RMS acceleration data showed captive sharks exhibited nocturnal diel patterns peaking during the late evening before midnight and decreasing before sunrise. Correlation analysis revealed that captive animals displayed similar activity patterns to free‐ranging sharks. The timing of wild shark departures for migration in the late breeding season corresponded with elevated diel activity at night within the captive individuals, suggesting a form of migratory restlessness in captivity. By directly relating RMS acceleration output to activity level, we show that sex, time of day, and sex‐specific seasonal behavior all influenced activity levels. This study contributes to a growing body of evidence that RMS acceleration data are a promising method to determine activity patterns of cryptic marine animals and can provide more detailed information when validated in captivity.
The presence of plastic in the environment is generating impacts on all habitats and has become a major global problem in marine megafauna. Macroplastics can cause entanglement, ingestion and loss of suitable habitats. In addition to entanglement problems, there is evidence that plastics are entering the food web through ingestion by marine organisms, which could ultimately be affecting humans. Much of the available information on the impact of plastic in biota is scattered and disconnected due to the use of different methodologies. Here, we review the variety of approaches and protocols followed to assess macro‐ and microplastic ingestion in marine vertebrates such as sea turtles, cetaceans and fishes in order to offer a global overview of their current status. The analysis of 112 studies indicates the highest plastic ingestion in organisms collected in the Mediterranean and Northeast Indian Ocean with significant differences among plastic types ingested by different groups of animals, including differences in colour and the type of prevalent polymers. In sea turtles, the most prevalent types of plastics are white plastics (66.60%), fibres (54.54%) and LDPE polymer (39.09%); in cetaceans, white macro‐ and microplastics (38.31%), fibres (79.95%) and PA polymer (49.60%); and in fishes, transparent plastics (45.97%), fibres (66.71%) and polyester polymer (36.20%). Overall, clear fibre microplastics are likely the most predominant types ingested by marine megafauna around the globe.
Movement ecology has traditionally focused on the movements of animals over large time scales, but, with advancements in sensor technology, the focus can become increasingly fine scale. Accelerometers are commonly applied to quantify animal behaviours and can elucidate fine-scale (<2 s) behaviours. Machine learning methods are commonly applied to animal accelerometry data; however, they require the trial of multiple methods to find an ideal solution. We used tri-axial accelerometers (10 Hz) to quantify four behaviours in Port Jackson sharks (Heterodontus portusjacksoni): two fine-scale behaviours (<2 s)—(1) vertical swimming and (2) chewing as proxy for foraging, and two broad-scale behaviours (>2 s–mins)—(3) resting and (4) swimming. We used validated data to calculate 66 summary statistics from tri-axial accelerometry and assessed the most important features that allowed for differentiation between the behaviours. One and two second epoch testing sets were created consisting of 10 and 20 samples from each behaviour event, respectively. We developed eight machine learning models to assess their overall accuracy and behaviour-specific accuracy (one classification tree, five ensemble learners and two neural networks). The support vector machine model classified the four behaviours better when using the longer 2 s time epoch (F-measure 89%; macro-averaged F-measure: 90%). Here, we show that this support vector machine (SVM) model can reliably classify both fine- and broad-scale behaviours in Port Jackson sharks.
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