Siamese fighting (betta) fish are among the most popular and morphologically diverse pet fish, but the genetic bases of their domestication and phenotypic diversification are largely unknown. We assembled de novo the genome of a wild Betta splendens and whole-genome sequenced 98 individuals across five closely related species. We find evidence of bidirectional hybridization between domesticated ornamental betta and other wild Betta species. We discover dmrt1 as the main sex determination gene in ornamental betta and that it has lower penetrance in wild B. splendens . Furthermore, we find genes with signatures of recent, strong selection that have large effects on color in specific parts of the body or on the shape of individual fins and that most are unlinked. Our results demonstrate how simple genetic architectures paired with anatomical modularity can lead to vast phenotypic diversity generated during animal domestication and launch betta as a powerful new system for evolutionary genetics.

The existence of among-individual variation in behaviour within populations is poorly understood. Recent theory suggests that fine-scale individual differences in investment into current versus future reproduction may lead to a ‘slow-fast’-pace-of-life continuum, also referred to as the ‘pace-of-life-syndrome’ (POLS) hypothesis. According to this idea, individuals are predicted to differ in their level of risk-taking, which may drive among-individual variation and covariation of behaviours. Consistent individual differences in aggression, an ecologically relevant and potentially risky behaviour, have been reported across the animal kingdom. Here we test whether such individual differences in aggression are a manifestation of underlying differences in risk-taking. In a wild blue tit (Cyanistes caeruleus) population, we used standard behavioural tests to investigate if male territorial aggressiveness and risk-taking during breeding are positively related. At the start of breeding, we simulated conspecific territorial intrusions to obtain repeated measures of male aggressiveness. Subsequently, we measured male risk-taking as their latency to resume brood provisioning after presenting two different predators at their nest: human and sparrowhawk, a common predator of adult songbirds. First, we found substantial repeatability for male aggressiveness (R = 0.56 ± 0.08 SE). Second, while males took longer to resume provisioning after presentation of a sparrowhawk mount as compared to a human observer, risk-taking was repeatable across these two predator contexts (R = 0.51 ± 0.13 SE). Finally, we found no evidence for a correlation between male aggressiveness and risk-taking, thereby providing little support to a main prediction of the POLS hypothesis. Significance statement Consistent, and often correlated, individual differences in basal behaviours, such as aggression, exploration and sociability, are found across the animal kingdom. Why individuals consistently differ in their behaviour is poorly understood, as behavioural traits would seem inherently flexible. The ‘pace-of-life syndrome’ (POLS) hypothesis proposes observed behavioural variation to reflect differences in risk-taking associated with individual reproductive strategies. We tested this idea in a wild blue tit population by investigating whether individual males that were more aggressive toward territorial intruders also took more risk when provisioning their nestlings under a threat of predation. While we found consistent individual differences in both aggressiveness and risk-taking, these behaviours were not significantly correlated. Therefore, our study demonstrates among-individual variation in ecologically relevant behaviours in wild blue tits but provides little support for the POLS hypothesis.

Siamese fighting fish, commonly known as betta, are among the world's most popular and morphologically diverse pet fish, but the genetic processes leading to their domestication and phenotypic diversification are largely unknown. We assembled de novo the genome of a wild Betta splendens and whole-genome sequenced multiple individuals across five species within the B. splendens species complex, including wild populations and domesticated ornamental betta. Given our estimate of the mutation rate from pedigrees, our analyses suggest that betta were domesticated at least 1,000 years ago, centuries earlier than previously thought. Ornamental betta individuals have variable contributions from other Betta species and have also introgressed into wild populations of those species. We identify dmrt1 as the main sex determination gene in ornamental betta but not in wild B. splendens, and find evidence for recent directional selection at the X-allele of the locus. Furthermore, we find genes with signatures of recent, strong selection that have large effects on color in specific parts of the body, or the shape of individual fins, and are almost all unlinked. Our results demonstrate how simple genetic architectures paired with anatomical modularity can lead to vast phenotypic diversity generated during animal domestication, and set the stage for using betta as a modern system for evolutionary genetics.