We report the design of a mass spectrometer featuring an ion source that delivers ions directly into high vacuum from liquid inside a capillary with a sub-micrometer-diameter tip. The surface tension of water and formamide is sufficient to maintain a stable interface with high vacuum at the tip, and the gas load from the interface is negligible, even during electrospray. These conditions lifted the usual requirement of a differentially pumped system. The absence of a background gas also opened up the possibility of designing ion optics to collect and focus ions in order to achieve high overall transmission and detection efficiencies. We describe the operation and performance of the instrument and present mass spectra from solutions of salt ions and DNA bases in formamide and salt ions in water. The spectra show singly charged solute ions clustered with a small number of solvent molecules.
Time-resolved multiphoton ionization mass spectrometry coupled with Rydberg Fingerprint Spectroscopy (RFS) has been used to analyze the structural and electronic dynamics of N,N-dimethylphenethylamine (PENNA) and N,N-dimethylcyclohexethylamine (CENNA). In PENNA, the molecule converts from 3p to 3s on a time scale of 149 fs, a process that is reflected in the mass spectrum as the onset of fragmentation. Once in 3s, the overall signal intensity of the PENNA 3s signal shows biexponential decay kinetics, which is attributed to the electronic curve crossing from the Rydberg state to a dissociative antibonding orbital of the ethylenic bridge. This curve crossing exemplifies a possible fragmentation pathway observed in electron capture dissociation of proteins. The initially fast reaction (1.3 ps) is greatly slowed down as a result of an apparent relaxation process with a 5.6 ps time constant. The electron binding energy of the 3s Rydberg state of PENNA is observed to shift with a time constant of 4.8 ps, which is correlated to a cation-π interaction driven conformeric rearrangement.
This paper investigates how faithfully an electrospray mass spectrometer will report the order of monomers of a single biopolymer in the context of two sequencing strategies. We develop a simplified one-dimensional theoretical model of the dynamics of Brownian particles in the Taylor cone of an electropray source, where free monomers drift towards the apex in an elongational force gradient. The likelihood that neighboring particles will invert their order decreases near the apex because the strength of the force gradient increases. Neighboring monomers on a stretched biopolymer should be cleaved by photofragmentation within about 3 nm of the apex if they are to enter the mass spectrometer in sequence with 95 % probability under typical experimental conditions. Alternatively, if the monomers are cleaved processively at milliseconds-long intervals by an enzyme, their sequence will be faithfully reported with 95 % confidence if the enzyme is within about 117 nm of the apex.
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