No abstract

The genome of Trypanosoma brucei, the causative agent of African trypanosomiasis, was published five years ago, yet identification of all genes and their transcripts remains to be accomplished. Annotation is challenged by the organization of genes transcribed by RNA polymerase II (Pol II) into long unidirectional gene clusters with no knowledge of how transcription is initiated. Here we report a single-nucleotide resolution genomic map of the T. brucei transcriptome, adding 1,114 new transcripts, including 103 non-coding RNAs, confirming and correcting many of the annotated features and revealing an extensive heterogeneity of 5′ and 3′ ends. Some of the new transcripts encode polypeptides that are either conserved in T. cruzi and Leishmania major or were previously detected in mass spectrometry analyses. High-throughput RNA sequencing (RNA-Seq) was sensitive enough to detect transcripts at putative Pol II transcription initiation sites. Our results, as well as recent data from the literature, indicate that transcription initiation is not solely restricted to regions at the beginning of gene clusters, but may occur at internal sites. We also provide evidence that transcription at all putative initiation sites in T. brucei is bidirectional, a recently recognized fundamental property of eukaryotic promoters. Our results have implications for gene expression patterns in other important human pathogens with similar genome organization (Trypanosoma cruzi, Leishmania sp.) and revealed heterogeneity in pre-mRNA processing that could potentially contribute to the survival and success of the parasite population in the insect vector and the mammalian host.

Lithium‐ion capacitors (LICs) are hybrid energy storage devices that have the potential to bridge the gap between conventional high‐energy lithium‐ion batteries and high‐power capacitors by combining their complementary features. The challenge for LICs has been to improve the energy storage at high charge−discharge rates by circumventing the discrepancy in kinetics between the intercalation anode and capacitive cathode. In this article, the rational design of new nanostructured LIC electrodes that both exhibit a dominating capacitive mechanism (both double layer and pseudocapacitive) with a diminished intercalation process, is reported. Specifically, the electrodes are a 3D interconnected TiC nanoparticle chain anode, synthesized by carbothermal conversion of graphene/TiO2 hybrid aerogels, and a pyridine‐derived hierarchical porous nitrogen‐doped carbon (PHPNC) cathode. Electrochemical properties of both electrodes are thoroughly characterized which demonstrate their outstanding high‐rate capabilities. The fully assembled PHPNC//TiC LIC device delivers an energy density of 101.5 Wh kg−1 and a power density of 67.5 kW kg−1 (achieved at 23.4 Wh kg−1), and a reasonably good cycle stability (≈82% retention after 5000 cycles) within the voltage range of 0.0−4.5 V.

Sodium-ion batteries have become a subject of increasing interest and are considered as an alternative to the ubiquitous lithium-ion battery. To compare the effect of two improvement strategies for metal oxide cathodes, specifically Codoping and morphology optimization, four representatives of the prominent material class of layered Na x MO 2 (M = transition metal) have been studied: hexagonal flakes and hollow spheres of P2− Na x MnO 2 and P2−Na x Co 0.1 Mn 0.9 O 2 . The better electrochemical performance of the spheres over the flakes and of the Co-doped over the undoped materials are explained on the basis of structural features revealed by operando synchrotron X-ray diffraction. The higher cycling stability of the material doped with ∼10% Co is attributed to three effects: (i) the suppression of a Jahn−Tellerinduced structural transition from the initial hexagonal to an orthorhombic phase that is observed in Na x MnO 2 ; (ii) suppression of ordering processes of Na + ; and (iii) enhanced Na + kinetics as revealed by galvanostatic intermittent titration technique measurements and in situ electrochemical impedance measurements. Increased capacity and cycling stability of spheres over flakes may be related to smaller changes of the unit cell volume of spheres and thus to reduced structural stress. Co-doped spheres combine the advantages of both strategies and exhibit the best cycling stability.

African trypanosomes, the causative agents of sleeping sickness in humans and nagana in animals, have a complex digenetic life cycle between a mammalian host and an insect vector, the blood-feeding tsetse fly. Although the importance of the insect vector to transmit the disease was first realized over a century ago, many aspects of trypanosome development in tsetse have not progressed beyond a morphological analysis, mainly due to considerable challenges to obtain sufficient material for molecular studies. Here, we used high-throughput RNA-Sequencing (RNA-Seq) to profile Trypanosoma brucei transcript levels in three distinct tissues of the tsetse fly, namely the midgut, proventriculus and salivary glands. Consistent with current knowledge and providing a proof of principle, transcripts coding for procyclin isoforms and several components of the cytochrome oxidase complex were highly up-regulated in the midgut transcriptome, whereas transcripts encoding metacyclic VSGs (mVSGs) and the surface coat protein brucei alanine rich protein or BARP were extremely up-regulated in the salivary gland transcriptome. Gene ontology analysis also supported the up-regulation of biological processes such as DNA metabolism and DNA replication in the proventriculus transcriptome and major changes in signal transduction and cyclic nucleotide metabolism in the salivary gland transcriptome. Our data highlight a small repertoire of expressed mVSGs and potential signaling pathways involving receptor-type adenylate cyclases and members of a surface carboxylate transporter family, called PADs (Proteins Associated with Differentiation), to cope with the changing environment, as well as RNA-binding proteins as a possible global regulators of gene expression.