A class II valence force field covering a broad range of organic molecules has been derived employing ab initio quantum mechanical "observables." The procedure includes selecting representative molecules and molecular structures, and systematically sampling their energy surfaces as described by energies and energy first and second derivatives with respect to molecular deformations. In this article the procedure for fitting the force field parameters to these energies and energy derivatives is briefly reviewed. The application of the methodology to the derivation of a class II quantum mechanical force field (QMFF) for 32 organic functional groups is then described. A training set of 400 molecules spanning the 32 functional groups was used to parameterize the force field. The molecular families comprising the functional groups and, within each family, the torsional angles used to sample different conformers, are described. The number of stationary points (equilibria and transition states) for these molecules is given for each functional group. This set contains 1324 stationary structures, with 718 minimum energy structures and 606 transition states. The quality of the fit to the quantum data is gauged based on the deviations between the ab initio and force field energies and energy derivatives. The accuracy with which the QMFF reproduces the ab initio molecular bond lengths, bond angles, torsional angles, vibrational frequencies, and conformational energies is then given for each functional group. Consistently good accuracy is found for these computed properties for the various types of molecules. This demonstrates that the methodology is broadly applicable for the derivation of force field parameters across widely differing types of molecular structures. Copyright 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1782-1800, 2001
Periodic density functional calculations (DFT) on bridging hydroxyl groups in the zeolite faujasite are performed. It is shown that force field calculations as presently parametrized are not able to reproduce the correct energetical ordering for these groups. Embedding not only gives the right ordering but also agrees well with the periodic calculations for geometries. OH stretching frequencies can be obtained in very good agreement with experiment by periodic DFT calculations in particular if anharmonic corrections are included. The same functionals used for the periodic calculations have been employed in calculations on model clusters, and it is shown that clusters provide a qualitative as opposed to a quantitative description of these systems.
The
solubility and diffusivity of CO2 in a series of
1-alkyl-3methylimidazolium tricyanomethanide ionic liquids ([C
n
mim][TCM] with n = 2, 4,
6, 7, 8; ILs) was studied using a magnetic suspension balance at temperatures
ranging from 298 to 353 K and pressures up to 2 MPa. The effects of
temperature, pressure, and alkyl chain length on CO2 solubility
and diffusivity were examined. The electrolyte PC-SAFT (ePC-SAFT)
equation of state was used to describe the solubility of CO2 in the ILs. The Henry’s law constant and the excess properties
of solvation (Gibbs free energy, enthalpy, and entropy) were calculated.
A series of equations derived from Fick’s second law were evaluated,
and a Fourier expansion of Fick’s second law of diffusion was
found to be the most suitable model for deriving diffusivities from
gravimetric data. The diffusivities range from 10–10 to 10–9 m2·s–1 in the temperature and pressure ranges applied. The activation energies
for CO2 diffusion (12–16 kJ·mol–1) were found to be in the range of traditional solvents.
Imidazolium-based ionic liquids (ILs) incorporating the tricyanomethanide ([TCM(-)]) anion are studied using an optimized classical force field. These ILs are very promising candidates for use in a wide range of cutting-edge technologies and, to our knowledge, it is the first time that this IL family is subject to a molecular simulation study with the use of a classical atomistic force field. The [C4mim(+)][TCM(-)] ionic liquid at 298.15 K and at atmospheric pressure was used as the basis for force field optimization which primarily involved the determination of the Lennard-Jones parameters of [TCM(-)] and the implementation of three quantum mechanical schemes for the calculation of the partial charge distribution and the identification of the appropriate scaling factor for the reduction of the total ionic charge. The optimized force field was validated by performing simulations of the 1-alkyl-3-methylimidazolium tricyanomethanide ([Cnmim(+)][TCM(-)], n = 2, 4, 6, and 8) IL family at various temperatures. The results for density, self-diffusivity and viscosity are in very good agreement with the available experimental data for all ILs verifying that the force field reliably reproduces the behaviour of the imidazolium-based [TCM(-)] IL family in a wide temperature range. Furthermore, a detailed analysis of the microscopic structure and the complex dynamic behaviour of the ILs under study was performed.
The liquid range and applicability of deep eutectic solvents (DESs) are determined by their physicochemical properties. In this work, the physicochemical properties of glycolic acid:proline and malic acid:proline were evaluated experimentally and with MD simulations at five different ratios. Both DESs exhibited esterification upon preparation, which affected the viscosity in particular. In order to minimize oligomer formation and water release, three different experimental preparation methods were explored, but none could prevent esterification. The experimental and calculated densities of the DESs were found to be in good agreement. The measured and modeled glass transition temperature showed similar trends with composition, as did the experimental viscosity and the calculated diffusivities. The MD simulations provided additional insight at the atomistic level, showing that at acid-rich compositions, the acid-acid hydrogen bonding (HB) interactions prevail. Malic acid-based DESs show stronger acid-acid HB interactions than glycolic acid-based ones, possibly explaining its extreme viscosity. Upon the addition of proline, the interspecies interactions become predominant, confirming the formation of the widely assumed HB network between the DESs constituents in the liquid phase.
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