Soybean cultivation holds great potential for a sustainable agriculture in Europe, but adaptation remains a central issue. In this large mega-environment (MEV) study, 75 European cultivars from five early maturity groups (MGs 000-II) were evaluated for maturity-related traits at 22 locations in 10 countries across Europe. Clustering of the locations based on phenotypic similarity revealed six MEVs in latitudinal direction and suggested several more. Analysis of maturity identified several groups of cultivars with phenotypic similarity that are optimally adapted to the different growing regions in Europe. We identified several haplotypes for the allelic variants at the E1, E2, E3 and E4 genes, with each E haplotype comprising cultivars from different MGs. Cultivars with the same E haplotype can exhibit different flowering and maturity characteristics, suggesting that the genetic control of these traits is more complex and that adaptation involves additional genetic pathways, for example temperature requirement. Taken together, our study allowed the first unified assessment of soybean-growing regions in Europe and illustrates the strong effect of photoperiod on soybean adaptation and MEV classification, as well as the effects of the E maturity loci for soybean adaptation in Europe.

In view of the expected increase in drought periods, researchers and breeders are searching for forage grasses that are more tolerant to drought stress. This study wanted to examine the physiological and biochemical reactions of nine forage grass varieties belonging to Festuca, Lolium and Festulolium under mild drought stress conditions in a semi-controlled field experiment. A mild drought stress treatment was applied in the period between cut II and cut III using three large mobile rain-out shelters equipped with sprinkler irrigation systems. The experiment consisted of two soil moisture treatments: (1) control where a soil moisture level of around 20% v/v was maintained and (2) drought stress where the soil moisture level decreased to 7.5% v/v. The experiment was cut 5 times in 2014 and 4 times in 2015. A total of nine varieties from five species of forage grasses were evaluated: L. perenne, L. multiflorum, F. pratensis, F. arundinacea and F. braunii. Dry matter yield, gas exchange parameters and chlorophyll fluorescence were significantly lower in drought stress than under control conditions and the physiological parameters reacted within 2 weeks after the start of the drought treatment in all species. In contrast, drought stress significantly increased water use efficiency, the content of proline, phenolic acids, flavonoids, water soluble carbohydrates and decreased neutral and acid detergent fibre on both years. Based on total dry matter yield and tolerance indices the most drought tolerant species were L. multiflorum in the first and F. arundinacea in the second investigated year.

Close remote sensing approaches can be used for high throughput on-field phenotyping in the context of plant breeding and biological research. Data on canopy cover (CC) and canopy height (CH) and their temporal changes throughout the growing season can yield information about crop growth and performance. In the present study, sigmoid models were fitted to multi-temporal CC and CH data obtained using RGB imagery captured with a drone for a broad set of soybean genotypes. The Gompertz and Beta functions were used to fit CC and CH data, respectively. Overall, 90.4% fits for CC and 99.4% fits for CH reached an adjusted R2 > 0.70, demonstrating good performance of the models chosen. Using these growth curves, parameters including maximum absolute growth rate, early vigor, maximum height, and senescence were calculated for a collection of soybean genotypes. This information was also used to estimate seed yield and maturity (R8 stage) (adjusted R2 = 0.51 and 0.82). Combinations of parameter values were tested to identify genotypes with interesting traits. An integrative approach of fitting a curve to a multi-temporal dataset resulted in biologically interpretable parameters that were informative for relevant traits.

Drought causes significant damage to a high value crop of soybean. Europe has an increasing demand for soybean and its own production is insufficient. Selection and breeding of cultivars adapted to European growth conditions is therefore urgently needed. These new cultivars must have a shorter growing cycle (specifically for adaptation to North-West Europe), high yield potential under European growing conditions, and sufficient drought resistance. We have evaluated the performance of a diverse collection of 359 soybean accessions under drought stress using rain-out shelters for 2 years. The contrasting weather conditions between years and correspondingly the varying plant responses demonstrated that the consequences of drought for an individual accession can vary strongly depending on the characteristics (e.g., duration and intensity) of the drought period. Short duration drought stress, for a period of four to 7 weeks, caused an average reduction of 11% in maximum canopy height (CH), a reduction of 17% in seed number per plant (SN) and a reduction of 16% in seed weight per plant (SW). Long duration drought stress caused an average reduction of 29% in CH, a reduction of 38% in SN and a reduction of 43% in SW. Drought accelerated plant development and caused an earlier cessation of flowering and pod formation. This seemed to help some accessions to better protect the seed yield, under short duration drought stress. Drought resistance for yield-related traits was associated with the maintenance of growth under long duration drought stress. The collection displayed a broad range of variation for canopy wilting and leaf senescence but a very narrow range of variation for crop water stress index (CWSI; derived from canopy temperature data). To the best of our knowledge this is the first study reporting a detailed investigation of the response to drought within a diverse soybean collection relevant for breeding in Europe.

The impact of mild drought stress (3 weeks at 40 % field water capacity) on yield, physiological processes, accumulation of proline and phenolic compounds and forage quality parameters in forage grasses was evaluated in pot experiments. During four different growing periods, the effects of water deficit were assessed in nine varieties from five species (Lolium perenne, Lolium multiflorum, Festuca pratensis, Festuca arundinacea and Festulolium braunii). All measured parameters were affected by drought stress in the different cuts. Photosynthesis, transpiration rate, stomatal conductance and dry matter yield were significantly lower in drought stress than under well-watered conditions in all varieties. Higher wateruse efficiency was only observed during the first and fourth drought period, while this was not the case in the second and third. Mild drought stress significantly increased the content of proline, phenolic acid, flavonoids, water-soluble carbohydrates and protein. All tested grasses showed also an increase of organic matter digestibility and cell wall digestibility under drought stress conditions.

The persistence and productivity of forage grasses, important sources for feed production, are threatened by climate change-induced drought. Breeding programs are in search of new drought tolerant forage grass varieties, but those programs still rely on time-consuming and less consistent visual scoring by breeders. In this study, we evaluate whether Unmanned Aerial Vehicle (UAV) based remote sensing can complement or replace this visual breeder score. A field experiment was set up to test the drought tolerance of genotypes from three common forage types of two different species: Festuca arundinacea, diploid Lolium perenne and tetraploid Lolium perenne. Drought stress was imposed by using mobile rainout shelters. UAV flights with RGB and thermal sensors were conducted at five time points during the experiment. Visual-based indices from different colour spaces were selected that were closely correlated to the breeder score. Furthermore, several indices, in particular H and NDLab, from the HSV (Hue Saturation Value) and CIELab (Commission Internationale de l’éclairage) colour space, respectively, displayed a broad-sense heritability that was as high or higher than the visual breeder score, making these indices highly suited for high-throughput field phenotyping applications that can complement or even replace the breeder score. The thermal-based Crop Water Stress Index CWSI provided complementary information to visual-based indices, enabling the analysis of differences in ecophysiological mechanisms for coping with reduced water availability between species and ploidy levels. All species/types displayed variation in drought stress tolerance, which confirms that there is sufficient variation for selection within these groups of grasses. Our results confirmed the better drought tolerance potential of Festuca arundinacea, but also showed which Lolium perenne genotypes are more tolerant.

Targeted and untargeted selections including domestication and breeding efforts can reduce genetic diversity in breeding germplasm and create selective sweeps in crop genomes. The genomic regions at which selective sweeps are detected can reveal important information about signatures of selection. We have analyzed the genetic diversity within a soybean germplasm collection relevant for breeding in Europe (the EUCLEG collection), and have identified selective sweeps through a genome-wide scan comparing that collection to Chinese soybean collections. This work involved genotyping of 480 EUCLEG soybean accessions, including 210 improved varieties, 216 breeding lines and 54 landraces using the 355K SoySNP microarray. SNP calling of 477 EUCLEG accessions together with 328 Chinese soybean accessions identified 224,993 high-quality SNP markers. Population structure analysis revealed a clear differentiation between the EUCLEG collection and the Chinese materials. Further, the EUCLEG collection was sub-structured into five subgroups that were differentiated by geographical origin. No clear association between subgroups and maturity group was detected. The genetic diversity was lower in the EUCLEG collection compared to the Chinese collections. Selective sweep analysis revealed 23 selective sweep regions distributed over 12 chromosomes. Co-localization of these selective sweep regions with previously reported QTLs and genes revealed that various signatures of selection in the EUCLEG collection may be related to domestication and improvement traits including seed protein and oil content, phenology, nitrogen fixation, yield components, diseases resistance and quality. No signatures of selection related to stem determinacy were detected. In addition, absence of signatures of selection for a substantial number of QTLs related to yield, protein content, oil content and phenological traits suggests the presence of substantial genetic diversity in the EUCLEG collection. Taken together, the results obtained demonstrate that the available genetic diversity in the EUCLEG collection can be further exploited for research and breeding purposes. However, incorporation of exotic material can be considered to broaden its genetic base.

Chenopodium album became a problem weed in sugar beet production, due to resistance to metamitron, a key herbicide in this crop. Dispersal of the seeds from resistant biotypes may occur due to spread by wind, animals, agricultural machinery or manure. This study examined the effect of ensiling, digestion by cattle and storage in slurry and farmyard manure on the germination and viability of the seeds of one susceptible and three resistant C. album populations. After 4 weeks in a maize silo, seed viability of C. album populations was reduced drastically to 0-5%. Incubation for 24 h in the rumen followed by a post-ruminal digestion in vitro of intact seeds only resulted in a small reduction in viability in one C. album population. Storage in a slurry cellar for 16 weeks reduced the viability of intact seeds of the C. album populations to 25-60%. Only 0-1% of the seeds remained viable after storage in a farmyard manure heap for 4 weeks. An accelerated ageing experiment showed seed persistence to be population specific and less related to seed weight. Keeping a fresh maize silo closed for at least 4 weeks and heaping farmyard manure are excellent preventive measures to limit the spread of resistant C. album seeds between fields.