Bioprospecting is the exploration, extraction and screening of biological material and sometimes indigenous knowledge to discover and develop new drugs and other products. Most antibiotics in current clinical use (eg. β-lactams, aminoglycosides, tetracyclines, macrolides) were discovered using this approach, and there are strong arguments to reprioritize bioprospecting over other strategies in the search for new antibacterial drugs. Academic institutions should be well positioned to lead the early stages of these efforts given their many thousands of locations globally and because they are not constrained by the same commercial considerations as industry. University groups can lack the full complement of knowledge and skills needed though (eg. how to tailor screening strategy to biological source material).In this article, we review three key aspects of the bioprospecting literature (source material and in vitro antibacterial and toxicity testing) and present an integrated multidisciplinary perspective on (a) source material selection, (b) legal, taxonomic and other issues related to source material, (c) cultivation methods, (d) bioassay selection, (e) technical standards available, (f) extract/compound dissolution, (g) use of minimum inhibitory concentration and selectivity index values to identify progressible extracts and compounds, and (h) avoidable pitfalls. The review closes with recommendations for future study design and information on subsequent steps in the bioprospecting process.
Strawberry powdery mildew (Podosphaera aphanis) causes serious losses in UK crops, potentially reducing yields by as much as 70%. Consequently, conventional fungicide application programmes tend to recommend a prophylactic approach using insurance sprays, risking the development of fungicide insensitivity and requiring careful management relative to harvest periods to avoid residual fungicides on harvested fruit. This paper describes the development of a prediction system to guide the control of P. aphanis by the application of fungicides only when pathogen infection and disease progression are likely. The system was developed over a 15-year period on commercial farms starting with its establishment, validation and then deployment to strawberry growers. This involved three stages: 1. Identification and validation of parameters for inclusion in the prediction system (2004-2008). 2. Development of the prediction system in compact disc format (2009-2015). 3. Development and validation of the prediction system in a web-based format and cost-benefit analysis (2016-2020). The prediction system was based on the temporal accumulation of conditions (temperature and relative humidity) conducive to the development of P. aphanis , which sporulates at 144 accumulated disease-conducive hours. Sensitivity analysis was performed to refine the prediction system parameters. Field validation of the results demonstrated that to effectively control disease, the application of fungicides was best done between 125 and 144 accumulated hours of disease-conducive conditions. A cost-benefit analysis indicated that, by comparison with the number and timing of fungicide applications in conventional insurance disease control programmes, the prediction system enabled good disease control with significantly fewer fungicide applications (between one and four sprays less) (df=7, t=7.6, p =0.001) and reduced costs (savings between £35-£493/hectare) (df=7, t=4.0, p =0.01) for the growers.
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