1. Landscape characteristics of sixty‐two subcatchments within the Saginaw Bay Catchment of central Michigan were examined to identify relationships with stream water chemistry. Land use, land cover and elevation were quantified for both entire catchments and the upland–river ecotone (100 m stream buffer strip). Catchment and ecotone data were then empirically compared with stream water chemistry using multivariate and regression analyses. Redundancy analysis was used to partition variance among land use, geology, and the shared influence of land use and geology. 2. Major catchments dominated by rowcrop agriculture had the highest alkalinity, total dissolved solids and nitrate + nitrite concentrations. 3. Strong seasonal differences were observed in total nitrogen and nitrite + nitrate, but not in total phosphorus or suspended solids. Land use and landscape structure factors such as slope and patch density (number of land use patches per km2) accounted for most of the observed variance in summer. 4. In both autumn and summer, landscape factors accounted for much of the observed variation in total dissolved solids and alkalinity. During autumn, geological factors and the shared influence of geology/landscape structure plus land use exerted more influence than did land use alone. 5. Total phosphorus and total suspended solids were much better explained by land use within the stream ecotone in summer than in other seasons. However, total nitrogen, nitrate, orthophosphate and alkalinity were equally well explained by land use within the ecotone and throughout the whole catchment. Only total dissolved solids in summer and ammonium in autumn were explained better by the whole catchment than the ecotone. 6. Our results show that relatively coarse spatial databases can provide useful descriptors of regional water quality.

Characterizing genetic diversity in Africa is a crucial step for most analyses reconstructing the evolutionary history of anatomically modern humans. However, historic migrations from Eurasia into Africa have affected many contemporary populations, confounding inferences. Here, we present a 12.5× coverage ancient genome of an Ethiopian male ("Mota") who lived approximately 4500 years ago. We use this genome to demonstrate that the Eurasian backflow into Africa came from a population closely related to Early Neolithic farmers, who had colonized Europe 4000 years earlier. The extent of this backflow was much greater than previously reported, reaching all the way to Central, West, and Southern Africa, affecting even populations such as Yoruba and Mbuti, previously thought to be relatively unadmixed, who harbor 6 to 7% Eurasian ancestry.

The oral microbiome plays key roles in human biology, health, and disease, but little is known about the global diversity, variation, or evolution of this microbial community. To better understand the evolution and changing ecology of the human oral microbiome, we analyzed 124 dental biofilm metagenomes from humans, including Neanderthals and Late Pleistocene to present-day modern humans, chimpanzees, and gorillas, as well as New World howler monkeys for comparison. We find that a core microbiome of primarily biofilm structural taxa has been maintained throughout African hominid evolution, and these microbial groups are also shared with howler monkeys, suggesting that they have been important oral members since before the catarrhine–platyrrhine split ca. 40 Mya. However, community structure and individual microbial phylogenies do not closely reflect host relationships, and the dental biofilms of Homo and chimpanzees are distinguished by major taxonomic and functional differences. Reconstructing oral metagenomes from up to 100 thousand years ago, we show that the microbial profiles of both Neanderthals and modern humans are highly similar, sharing functional adaptations in nutrient metabolism. These include an apparent Homo-specific acquisition of salivary amylase-binding capability by oral streptococci, suggesting microbial coadaptation with host diet. We additionally find evidence of shared genetic diversity in the oral bacteria of Neanderthal and Upper Paleolithic modern humans that is not observed in later modern human populations. Differences in the oral microbiomes of African hominids provide insights into human evolution, the ancestral state of the human microbiome, and a temporal framework for understanding microbial health and disease.

1. Patterns of macroinvertebrate community composition were examined in streams within a 40000-km^ catchment in central Michigan, U.S.A., to identify the major environmental gradients influencing community variation. Agriculture and associated clay and sandy soils predominated in much of the region. 2. Eighty macroinvertebrate taxa were collected from stream surveys conducted during May and August 1990. Community composition varied primarily by the proportions of Plecoptera and Ephemeroptera. Benthic communities from the heaviest agricultural zones were most different from those at other sites. 3. Chemical composition among the sites varied most in relation to nutrients (NH3, NO3, PO4). Other parameters were relatively similar. Physical characteristics of the sites were scored in six habitat categories: (i) substrate characteristics, (ii) instream cover, (iii) channel morphology, (iv) riparian zone and stream-bank conditions, (v) riffle/run quality, (vi) pool quality. Most physical habitat scores were lowest in the intense agriculture zones. 4. The relative importance of physical and chemical variables in explaining variation in macroinvertebrate communities was quantified using canonical correspondence analysis. Substrate characteristics were most important in both surveys. Significant correlations (P<0.05 and P<0.10) were observed between substrate quality and total numbers of Ephemeropteran, Plecopteran, and Trichopteran taxa. These relationships reflected correlations from sites in the clay soil-type region (P<0.01 and P<0.10) which contrasted with non-significant results from the less impacted, sandy soil-type region. 5. Effective stream restoration efforts in this region will require the alteration of local land-use activities that influence the physical habitat. Further development of empirical relationships between catchment activities and substrate and channel characteristics within natural geomorphic regions is essential for the evaluation of restoration projects.

Toxicity of sediment pore water from 13 sites in the lower Fox River/Green Bay watershed was assessed using a number of test species. Sediment pore water from the 10 lower Fox River sites exhibited acute toxicity to fathead minnows (Pimephales promelas) and Ceriodaphnia dubia, and pore water samples from all 13 sites were chronically toxic to C. dubia. Sediment pore water from seven of the sampling sites was toxic to Selenastrum capricornutum, but none of the samples were toxic to Photobacterium phosphoreum. Toxicity characterization, identification and confirmation procedures indicated that a significant amount of the acute toxicity of the pore water to fathead minnows and C. dubia was due to ammonia. The identification of ammonia, a naturally occurring compound in sediments, as a potentially important sediment‐associated toxicant has implications for sediment toxicity assessment and control, not only in the Fox River and Green Bay, but in other freshwater and marine systems as well.